Penaeus chinensis (fleshy prawn): 125029977
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Entry
125029977 CDS
T08118
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125029977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchn03021
]
125029977
03019 Messenger RNA biogenesis [BR:
pchn03019
]
125029977
Transcription machinery [BR:
pchn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125029977
Messenger RNA biogenesis [BR:
pchn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
125029977
U7-dependent histone pre-mRNA processing factors
125029977
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
DUF3137
Motif
Other DBs
NCBI-GeneID:
125029977
NCBI-ProteinID:
XP_047476139
LinkDB
All DBs
Position
10:complement(22315204..22324453)
Genome browser
AA seq
694 aa
AA seq
DB search
MSANRPRVQVLNLPDEESDELKITPLGSGQEVGRSCHFLEFKGKKVLLDFGIHPALTGMS
ALPFVDHIDPEQIDLMLVSHFHLDHAGGLPWFLMRTRFKGRCFMTHPTKAIYKWLLSDYI
KVSNIATEHMLYSESDLEASLNKINVINFHEEKEVNGIKFWCYHAGHVLGAAMFMIQIAG
VKLLYTGDFSRQEDRHLMMAEIPQIRPDVLMIESTYGVSIHEPRESRETRFTTTVHTIVG
RGGRCLIPVFALGRAQELLLILDEYWQQHPELHEVPIYYASALAKKCMSVYQTYTHAMNE
RIQRQISISNPFQFKHISNLKGMDQFEDIGPCVIMASPGMMQSGLSRELFEMWCPDPKNG
VIIAGYCVEGTLAKEILKEPEEVTTMSGQRLPMKCSVEYISFSAHTDFEQTSHFIRTIRP
PNVVLVHGEMTEMSRLKAALEREYEASTESPVKVFNPKNLETVTFHFRGEKMAKVMGDLA
LQKPKENDVVSGILVKRNFNCHIISPKELGKYSDLMVSTITQRSSIHYTGSWQLLHYLLA
SMYGSVEVILSETAENNSLRVFDAITLVQEPPVVVLEWTASPTADMYADAVMKVILKAQD
LDNSSVSVPTNMNPTFDKMHFKECLIELLQEMFGEESVPKIFKGEKLYVTVNNVKANIDL
SIMKVSCESEKLQRIVQTAVTKLYESLAPVTAAV
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctaatcgaccaagagtgcaggttctaaatcttccagatgaagagagtgatgag
ttaaaaataacgccactgggctctggccaggaagtaggaagatcatgtcactttctggaa
ttcaaaggcaagaaggtcttgttggactttgggatccatccagcactgactgggatgagt
gccctgccctttgtggaccatattgatcctgagcaaattgacctgatgttagtgtcacac
tttcacttggaccatgctggtggtttgccatggtttcttatgcgaactcgcttcaaaggt
cgctgcttcatgactcatcccactaaagctatctacaagtggcttctttccgattatata
aaagtcagtaatatagctactgaacacatgctgtattctgagagtgatttggaggcctca
ctaaacaagatcaacgttattaattttcatgaggaaaaggaagttaatggaatcaagttc
tggtgctatcatgctggacatgtacttggggctgctatgtttatgatacagattgctggt
gtgaagctcctatatactggtgatttctcaaggcaagaggatcgtcacttgatgatggca
gaaattccccaaataagaccagatgtgttaatgattgagtctacatatggtgttagtatc
catgaaccccgagagagtagagaaacaagattcacaacaacagttcacacaattgttggc
agaggtggacgttgtttgatacctgtgtttgcacttggcagggctcaagaactcctccta
attttggatgaatattggcagcagcaccctgaacttcatgaagtgcctatctactatgca
tctgccctggccaagaaatgcatgagtgtgtaccagacttacacacatgccatgaatgag
aggattcagagacagatctcaataagtaatccatttcagttcaagcacatatcaaatttg
aagggtatggatcagtttgaggacattgggccatgtgttattatggcatctccaggtatg
atgcagagtggactttccagagaattatttgaaatgtggtgcccagaccccaagaatggt
gtcatcattgcaggttactgtgtggaaggcacactggctaaagaaattctgaaggaaccc
gaagaagtaactacaatgtcaggccagagactgccaatgaagtgctctgtggagtatatt
tcattttcagctcatacagactttgagcaaacttctcacttcatccgcaccatacgcccc
ccaaatgtggtgttggtacatggggagatgactgaaatgtcccgtttgaaagctgcattg
gagagggaatatgaagccagcactgagagtcctgtgaaagtgttcaatcccaagaacctt
gagacagttacattccacttcaggggtgagaagatggccaaggtgatgggagatcttgca
ttacaaaagcctaaggaaaatgatgttgtctctggcattcttgtgaagcgcaacttcaac
tgtcacattatttctcccaaagaactgggaaaatacagtgacttgatggtgtccaccatt
acccagagatcaagcatccactatacaggttcatggcagctgcttcattatttacttgca
tcaatgtatggcagtgtggaagtgatcctgtctgaaacagcagagaacaatagtcttcgc
gtatttgatgctataacccttgtccaagaacctcctgtggttgtattagagtggactgca
agtcccacagctgatatgtatgcagatgctgtaatgaaggtgattctgaaggcccaggac
ttagacaactcttctgtttctgtgccaacaaacatgaatccaacctttgacaagatgcat
ttcaaagaatgccttatagaacttttgcaagaaatgtttggagaggaatctgttccgaag
atcttcaaaggggaaaaactttatgtaacagttaacaatgtaaaggcaaacattgacctg
tcaattatgaaagtgtcatgtgaaagtgaaaaactgcaaagaatagtacaaactgctgtt
accaagttgtatgaatccctggcacctgtaactgcagctgtttag
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