Penaeus chinensis (fleshy prawn): 125029992
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Entry
125029992 CDS
T08118
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125029992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchn03021
]
125029992
03036 Chromosome and associated proteins [BR:
pchn03036
]
125029992
Transcription machinery [BR:
pchn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
125029992
Coactivators
SAGA/TFTC/STAGA complex
125029992
Chromosome and associated proteins [BR:
pchn03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
125029992
STAGA complex
125029992
TFTC complex
125029992
SAGA complex
125029992
SLIK complex
125029992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_HPS5
WD_LRWD1
Beta-prop_Nup120_160
Beta-prop_WDR19_1st
LisH
WDR54
Motif
Other DBs
NCBI-GeneID:
125029992
NCBI-ProteinID:
XP_047476156
LinkDB
All DBs
Position
10:34170922..34180582
Genome browser
AA seq
747 aa
AA seq
DB search
MSDAAGPTYASLTPANPTIINGLAGVDLQTGQQLTTHQGVMNHNDQTVVNSVNVVNTVGV
AGTGAVQTVASPIMATVIPPNSGSPAQANGNATATTGESSVSLDRNSLVAVLNFLKKNQF
KATEDLLRQETNFYDTVSDSEGGIGGDSEVTSVLSAYKSEGDPAEYEDAYKSLQNFIEKS
LDAYKHEVALVLFPVFVHMYLELVYNGHEEVAKSFMEKFGNTQEDYFEEDMHKLSLVTSR
DHMTGYQIMDNFRSNQFTVRMSRDTYAHLKRYLTERGGGPVARIIHDRLYLDVYEGVPRT
RAQVGATAGAQEGEAPKQVNKTKIYYGLLKEPELPNLAMEEEEGEEEGDKPKKKKPKKDA
LQKSKKNDPNAPPTYRIPLPELRDIDRIEKAKAFRDTVKRVTLNRETLPSICFYTFLNAT
GNITGVDISDDSSLLAYGTADSQVRVQSITPSKLRCMKSAEQLNDIDKDADDVLVRMMDE
RTADYVRTLLGHSGPVYACSFSPDRNLLLTAGEDGTIRLWSLQTWTCLVVYKGHVFAVWD
VRFSPYGYYFASGGHDRTGRLWATDHHQPLRIFAGHFSDVDVVQFHPNSNYVASGSSDRS
IRLWDVLNGNCVRVLTGHKDVIDALAFSPCGRFLASGGGDKRVLVWDLANGHLIAEMLSH
TSTIYTISFSRDCNMLASGGLDNCVKLWDFTRVLEDNHEEDVSVSHNPDVKRGESLLLGT
FPTKNTPVLATHFTRRNVLLAAGPFEG
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgcggcgggccccacttacgctagtttgacacccgctaacccgaccataatc
aacgggttggctggtgtcgacttgcagacgggtcaacagctcaccacacaccaaggcgtc
atgaatcacaacgaccaaacggtggtgaactcggtgaatgtggtgaacacagtcggggta
gctgggactggcgccgttcaaactgtggcatcgccaattatggccacggttattcctcca
aattcagggagtccggctcaggctaatggtaatgcaacagcgactacaggagaatcttcg
gtttccttagatagaaactctctcgtcgcggtcttaaactttttgaagaaaaatcagttc
aaggcaacagaggatttgctaaggcaggaaaccaatttttatgacactgtatctgacagt
gaaggaggtattggtggtgattcagaggtcacaagtgtcttgtctgcttataagagtgag
ggagacccagctgagtatgaagatgcatacaaaagtcttcagaactttattgagaagagt
ctggatgcatacaagcatgaagtggcattggtgctcttcccagtcttcgtccacatgtac
ctagaattagtgtacaatggtcatgaggaagttgcaaaatcattcatggagaaatttggc
aatactcaggaggattactttgaggaagatatgcataaactctctcttgttacatcaagg
gaccacatgacaggataccaaatcatggataactttcgatcaaaccagtttacagtgaga
atgtcaagagacacctatgcgcacttgaaacggtacctgactgagcgtggaggaggacct
gttgcaagaatcatacatgacaggctgtacctggatgtttatgaaggagttcctcggaca
agagcacaggttggagcaacagcaggagctcaggaaggagaagcacccaaacaggtcaac
aaaaccaaaatctattacggactcctgaaagagccagagctgccaaacttagcaatggag
gaagaggagggtgaagaagagggagataagccaaaaaaaaagaagccaaagaaagatgcc
cttcagaagagcaagaaaaacgatccaaatgcaccacctacctacagaatacccttgcca
gaactgcgggatattgatcgaattgaaaaagccaaagcgttcagagatacagtaaagaga
gtcacactaaacagagagactctaccatctatatgcttctatacatttttgaatgcaaca
gggaacataacaggggttgatatatcggatgattcaagcttgctagcttatggcacagct
gattctcaagttcgtgtacaaagcatcacaccaagcaaattaagatgtatgaagtctgca
gaacagctgaatgacattgacaaagatgccgatgacgtcttggtacgtatgatggatgaa
agaactgcagattatgtccgcactctccttgggcattcaggcccagtttatgcttgctcc
tttagtccagaccgtaatctcttgttgacagcaggagaggatggtactattcgcttgtgg
agcttgcagacctggacctgtcttgttgtgtacaagggtcatgtttttgctgtatgggat
gtgagattttctccctatggctattactttgcatcaggaggtcacgatcggactggccgt
ttatgggcaacagatcatcatcagccattaagaatttttgcaggacatttttcagatgtt
gatgttgttcagttccacccaaacagcaattatgttgcttctggttctagtgatcgcagc
atcagactttgggatgttctcaatggaaattgtgttcgcgttctaacaggccacaaggat
gttattgatgccttagcattttcaccatgtgggaggtttctggcttctggtggtggagac
aagcgtgttttagtatgggatctggcaaatgggcatcttattgctgaaatgttgtctcat
acatcaacaatctacacaatttctttctcaagagattgtaatatgcttgcttcaggtgga
ctggacaactgcgtaaagctgtgggacttcacacgtgttctagaagacaatcacgaggag
gatgtcagtgtatctcacaatcctgatgttaaacggggtgaatccttgctcttggggaca
ttcccaacgaaaaatacaccagtgcttgcaacacactttaccagaagaaatgttttgttg
gctgctggaccctttgagggatga
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