Penaeus chinensis (fleshy prawn): 125030762
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Entry
125030762 CDS
T08118
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1-like
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
125030762
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchn03021
]
125030762
Enzymes [BR:
pchn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
125030762
Transcription machinery [BR:
pchn03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
125030762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
BUD22
SURF2
Motif
Other DBs
NCBI-GeneID:
125030762
NCBI-ProteinID:
XP_047476981
LinkDB
All DBs
Position
11:14313114..14336002
Genome browser
AA seq
1787 aa
AA seq
DB search
MGSYGQLSYTYVEDINFRVYTDEEIRKISVLRITNDLSINELGHFSPDGLYDLRMGPMSV
RERDQCQTCRQESNRCQGHCGHIDLPLPLYNPFFYDVLKKIVGRICWTCFRYQAKPHQAV
LLVNQVQLLKEGYGQEALEMEEIASRIISGEGGEADEVKVGLDDKDIKGSEKGYPHMVMM
RKLDKELSNFYKKVIAGGTCSSDTSTSNVKAVHQQVTRHFYNESQPKLSCHFCRTRRLRL
TLQNSRFMVVNKSATTIKNQNLKEKKAATPQKPKAKAKAKPKWKESVFSDEDESDGYDDA
EDKNVDMEEASPEKVKEEEEESLEKNAEGNDDDDTEPKEEEETMKDSSSSIVSDAQSYVT
PEQVRNALRKVWLKDNELLKHLYPILGCSEWEYPTDMFFLHTLLVIPPRYRPCDFQNGMT
VEHETSTLLKSVVKLSKCLTFLMSLVNGTLKEIPETLNYIISEIPGKNPLEKSQTVWFQM
QGNVDNIFDADLNRLARTTTKGIRQVIEKKNGLFRRNLMGKRVNYSARSVAAPDPLLAVD
EVGVPMDFAIRLSYPVPVTQWNVEELRQLVINGAYEYPGALMVEDEEGSKKRLTTLDKNQ
RIAIAKQLLTPKESHVRRVNATKIVYRHLQNGDLVLMNRQPTLHRPSIQAHRSRIMPKDR
VLRMPYANCKAYNADFDGDELNMHFPQNELARSESHHLITTKNQYLTPKDGSPLAGLIQD
CVVSSVMLTMRGTFFSKEDYQQLLYSALAEETRKIEILPPAILKPKMLWSGKQVISSLLH
NIIPKTKARPSFSFRTSVKVDLWQTDEPRTWKAGGKPEKRKECMTESDFVMRDGELLAGV
IDKSAIGSTSHGLVHVCYDLYGGSVATRVLTAINRLCVYYLQWSGHTISVKEFVTSKGLS
KKRRENLAELVKKAPSKVSQRLHITENDFRDYFENSHMSGNEKDMAAIDAAYTAALGPTT
SEITAENERGLLRCSLDNHMRMMVDTGAKGSKVNMNQMASLFGSVAIDGKRMPISITGKF
LPSFKPYEANPRAGGYIPHRFMTGMDPEAYFYLCIVGRDSLQHTAVKTANSGYLQRCLIK
HLEGIQVKYDMTVRNSDGLVLQFNYGEDGQDVTKVPFLKSSTTMNVLVENYSRLLEDRSL
TIAKSVGDKEEVDHYTKKLKKWRKKYGKEGSGRRSGFLKFCKKMSKTIEAPGYCNDTGRP
NSYKVLQEMWAELPEEEKLKYEKVGAHCPDPVNSVFSGAANLGVVSEALEQLIDDYYENH
YSKKPTQEQKLTYEEVATTVHMKALTSKVDPGEAVGALCAQAIGEPLTQMTLNTFHFAGR
DELNVTLGVPRMVEILRTAGKNISTPIMEVPFHKSVTKAYATALQIKLTEVPLAKVLHGL
DVSVQLERDGKNRIHRSTKVKFTFLPHKQYKHVCAVNPSRVLQYMERQFIPKIMTKEIHR
SFMKKKSACSTALDQKRAERKARDEEDDAEVNEEGDTKVIEEQKQAADESSGDEDEDEPE
VGADDGTLASRNTKAKEQDYSEDEGEKESREQSENEEEPDNNEMSEDELMPVNVKTPKKK
KGTAISESTVRFRKSAVTDADAWIVDYSFDTEEELWCEVTMLLPLAGGNYDIPSIVRQKS
QRCLIHSVPGIKRVFVVEKDDGLLLRTEGVNIFKMFEYEHLLDVNRLYTNNIHQVAEMYG
IEAAQRSIIRELRAVQSAYDIKVDFRHLTLLADYFTCEGVYKACSRQALATCLSPLQKMS
YETCIAFLKSALLQGEKDRMLSPSANIAVGQPVKVGTNVMHVLPLIR
NT seq
5364 nt
NT seq
+upstream
nt +downstream
nt
atgggcagctatgggcagttgagctatacctatgtggaagacattaacttccgtgtctac
acagatgaggaaatcaggaagatatctgtcttacggatcactaatgacttgtccattaat
gagctgggacacttctcgcccgatggcttgtatgacctgcgcatgggccctatgtctgtg
cgtgaacgagaccagtgtcagacatgtagacaagagagcaaccgctgccagggccattgc
ggacacatcgacttgcctctgccactctacaatcccttcttctatgatgtcttaaagaaa
attgtggggagaatatgctggacctgcttcagataccaagcaaagccacatcaagcagtg
ctgttggtgaaccaggttcagttgctaaaggaaggctatgggcaagaggctctagaaatg
gaagaaattgcctccagaatcatctcaggagaaggtggagaggctgatgaggtaaaagtg
ggtctggatgacaaggatataaaaggaagtgaaaagggatatccacacatggtaatgatg
aggaaacttgacaaagaactaagcaatttttacaaaaaggttattgcaggtgggacgtgc
agctctgacacatcaacatcaaatgtgaaggccgtccaccagcaagtcacaaggcacttc
tataacgaaagtcagcccaagctttcgtgccacttctgtcgcaccaggagactgcggttg
acacttcagaattccaggttcatggtggtcaacaagtcagccacaactataaaaaatcag
aatttgaaagagaagaaagcagccacacctcaaaaacccaaggctaaggcaaaggccaag
ccaaagtggaaggagagtgttttttccgatgaagatgagtccgatggatatgatgatgct
gaggataaaaatgttgatatggaagaggccagcccagagaaagttaaggaggaggaggaa
gagagtttagaaaagaatgcagagggaaatgatgatgacgacacagagccaaaggaggaa
gaggaaactatgaaagattccagttcgagtattgtgtcagacgcgcagtcttacgtgaca
cctgagcaggtacgaaatgctctacgaaaagtttggctcaaagacaacgagttactgaag
cacctgtatcccattctgggctgttcagaatgggaataccccacagacatgttctttttg
cacacactgcttgtgattcctccaagataccgcccctgtgacttccagaatgggatgacg
gtggaacatgaaacaagcactctcctgaagagtgttgtaaagctgtcaaagtgcctcact
ttccttatgtctctagtgaatggcaccttaaaggagattcctgaaactctcaactacatt
atctctgagattcctggaaagaatccccttgagaagagtcagactgtatggttccaaatg
caagggaatgtagacaacatctttgatgccgatctcaatcgcctggccaggaccacaacc
aaggggattagacaggtgattgagaaaaagaatggccttttccgacggaacctgatgggc
aaacgtgtcaattactcagcaagatcagtggctgcccctgatcctctccttgctgtagat
gaagtgggtgtacccatggattttgctatccgactctcgtacccagtgcctgtaacacag
tggaatgtggaggaactgaggcagctggtaataaatggagcatatgagtaccccggagcg
ttgatggttgaggatgaagagggcagtaagaagcgtctcacaacactggataagaaccag
cgtattgccatagctaagcagttactcaccccaaaagaatcacatgtaagaagagttaat
gctaccaaaattgtctacaggcacttgcaaaatggtgatttagttctcatgaaccgtcag
ccaaccttacataggccaagtatacaagctcacagatcgagaattatgccaaaggaccgt
gtgttgcgtatgccttatgccaattgcaaagcctacaatgctgattttgacggggatgaa
ctcaacatgcacttccctcaaaatgagctggcacgcagtgagtcccaccacctcatcaca
accaaaaaccagtacctcactcccaaggacggctctcctctggcaggtctcatccaggac
tgcgttgtgtctagtgtaatgttgaccatgcgtgggacattcttcagcaaggaggactac
caacagttactctactcagcacttgctgaagagaccaggaagatcgaaatcctcccgccg
gctattttgaagccaaaaatgctgtggtctggaaagcaggtcatttccagccttcttcat
aacatcatccctaagacaaaggccagaccttcttttagcttcagaacttcagtcaaagtg
gatttgtggcaaacagatgaacccagaacatggaaagcaggtgggaagccagagaaaagg
aaagagtgcatgacagaatcagattttgtcatgcgagatggtgaactcttggctggagtg
atagacaagagtgccataggatctactagccacggcttggttcacgtttgttatgatctt
tatggtgggtcagttgcaacgagagtactaacagccatcaacaggctgtgtgtgtactac
ttacagtggtcaggtcacaccattagcgtaaaggagtttgtcacatcaaaaggtctcagc
aagaagcgaagggaaaatctagcagaattggtcaagaaagccccaagcaaagtgagtcag
aggcttcatatcacagagaacgattttagagattactttgaaaattcacacatgtctggg
aatgaaaaggatatggctgccattgatgcagcttacacagctgccctgggtcccaccacc
tcagagatcacagcagaaaacgagagaggacttctccgttgcagccttgacaaccacatg
agaatgatggtggacaccggtgcaaaaggttcaaaggttaacatgaaccagatggcttca
ctctttggatctgtggccattgacggcaagagaatgcccataagcattacagggaagttt
ttgccatcattcaaaccttatgaagccaatccacgcgctggaggttatatcccccatcgc
ttcatgacagggatggatcctgaagcatatttctacttgtgtattgtaggccgtgatagt
ttacaacatacagctgtaaagacagccaacagtggttatttacagcgatgtcttatcaag
catttggaggggatacaggtcaaatatgacatgaccgtgagaaatagtgatggacttgta
ttacagttcaattacggagaagatggacaggatgtgacaaaggttcccttcctgaaaagt
agcaccaccatgaatgtgttggtagagaattacagtcgacttttagaagaccgctcactt
accattgccaagtctgtaggggacaaagaagaagtagaccactacacaaagaagctaaag
aaatggcgtaagaagtatggcaaggagggtagcggtcggcgttctgggttcctcaagttc
tgcaaaaagatgtcaaagacgatagaagcccccgggtactgcaatgatacaggccgtcct
aattcatataaagtacttcaggaaatgtgggctgagctgccagaagaggagaaattaaag
tatgagaaagttggtgcacattgcccggacccagtgaattcagtattttctggtgcagcc
aatcttggtgttgtatcagaagctttggaacagctcattgatgattactatgaaaaccac
tattcaaagaaacccactcaggagcaaaagctaacatatgaggaggtggcaacaacagtt
cacatgaaggctttaacatcaaaggttgatcctggtgaggcagttggtgcgctgtgtgct
caggccattggtgaaccactgactcagatgacactcaacactttccattttgccggaagg
gatgagcttaacgttactcttggtgtgcctcggatggtggaaatcttgcgaactgctggg
aaaaacatctcgacaccaatcatggaagtacctttccataagagtgtcacaaaggcctat
gcaactgccctgcagattaagctcactgaagtcccattagctaaagttctacatggacta
gatgtcagtgtacagctggaaagggatggaaagaacagaattcatcgctcaacgaaggtg
aaattcaccttcctccctcacaagcagtacaaacacgtgtgtgctgtgaatccctcccga
gtgctacagtacatggagcgtcagttcattccaaaaataatgacgaaagaaattcataga
tcatttatgaaaaagaaatcagcatgttcaacagccctagatcaaaaaagagcggagaga
aaagcacgtgatgaagaagacgacgctgaagtcaatgaagagggggataccaaagtgata
gaggagcagaaacaagcggcagatgagagctctggtgatgaagatgaagatgagcctgag
gtgggtgcggatgacggcacgttggcctctcgcaacacaaaagcaaaggagcaagactac
tcagaagacgagggggagaaggaaagcagagagcaatcagagaatgaagaagaacccgac
aacaatgaaatgtcggaggatgaattaatgccagtaaatgtcaaaactcccaagaagaaa
aagggtactgccatcagtgaatctacagtacggtttaggaagagtgcggttacagatgca
gatgcttggatagtcgactacagctttgacacagaagaggaactgtggtgtgaggttacc
atgctcttgcctctggctggaggtaactatgacatcccatccattgtgcggcaaaagtct
caacgctgcctaattcacagtgttcccgggattaagcgtgtttttgttgtggagaaggat
gacgggttattgctgagaactgagggagttaatatatttaaaatgtttgaatatgagcat
ctcttagatgtgaatcgtctctacaccaacaatattcaccaagtagctgagatgtatggg
atagaagccgcacagcgttcaatcataagggaattgcgggctgtacaatctgcatatgat
atcaaggtcgacttccgccacttaaccctcctggctgattactttacctgcgagggggtt
tacaaggcctgttcccgccaggctctggctacgtgcctttctccactacagaagatgtct
tatgagacttgtatagcttttctcaaatcagcacttttacaaggagagaaagaccgaatg
ctgtcaccatcagcaaacattgctgttggacaacctgttaaagtaggcacaaatgttatg
catgttctgcctctaattagataa
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integrated database retrieval system
