Penaeus chinensis (fleshy prawn): 125030903
Help
Entry
125030903 CDS
T08118
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125030903
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pchn00536
]
125030903
Glycosaminoglycan binding proteins [BR:
pchn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125030903
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
New_glue
Motif
Other DBs
NCBI-GeneID:
125030903
NCBI-ProteinID:
XP_047477194
LinkDB
All DBs
Position
12:25503809..25524282
Genome browser
AA seq
1542 aa
AA seq
DB search
MWRLPDPVRRPPLAAAASLLLLAAAALAEPEPEAKPQEYNYDNYDYDYYNYGEYEYGPDE
SYDPYEAEATPDPYATPAPYDPYPEEEEPYDPYATPAPYDPYDPYATPSPYDPYGRDPYE
QTEPPTTTTTTTTTTTTTTTTPPPPPPPPTTPRRDLDYERRASRPRRPKGQRPDRRPTEE
EPTEIVGPTQPDPNRGSVGASGSPGERGPTGSPGNPGIPGDPGPPGPMPDITPWISQLSQ
SQGGEKGPSLTYEMQAQVGPIGPRGPAGNPGPAGPQGFQGMRGEPGDPGPSGSTGPPGPR
GLPGIPGKDGENGEDGAAGPPGAVGPPGPRGLPGMPGLPGVKGHRGFPGLDGAKGEQGSS
GDKGASGPPGQPGPIGPMGAAGPRGERGREGPPGPPGLRGIDGIAGPPGPPGGPGKPGPP
GFPGSAGAKGDQGVQGPKGSQGLQGPRGEGGKPGIPGEAGPQGPSGKDGLTGEKGAPGTQ
GDAGPPGFPGARGPPGLPGSPGVPGAKGERGLTGERGFKGEFGMKGEGGTPGPRGLPGPP
GSPGKRGKRGMVGPAGGMGPQGERGPPGGRGLPGADGPPGPKGQSGDAGPPGNLGQKGRE
GNPGPSGMPGRRGLRGPGGLSGPPGKTGRPGERGAPGADGKPGDQGPQGIQGLPGPMGMP
GAQGQIGETGKEGSPGETGPTGPRGDPGKDGSAGPIGQPGPTGPAGERGPPGPPGARGFQ
GLPGAPGSDGTAGKDGEAGLQGPRGLPGGPGLRGTRGFPGERGAQGPPGENGARGESGLP
GPDGPAGPPGPSGQKGHAGPSGLVGLPGGRGPVGLPGEKGERGGLGRAGPEGPPGRQGDQ
GPQGVMGPPGPPGEPAEKGDPGPPGPPGEAGANGMMGERGPQGQQGIQGFPGPLGPPGVG
GPKGQRGLPGQKGSQGNPGPVGQPGSTGSQGLPGLNGAKGQRGESGQRGEPGLMGPPGRP
GTAGTPGSSGEPGPAGLAGNPGIKGSPGDSGRPGLPGPSGQPGAPGPEGPKGESGPQGRI
GLVGKPGPPGPSGERGLPGLPGPPGPPGLRGQTGARGEPGAEGKRGAEGPVGPPGLTGPP
GAIGPTGDTGSPGSDGKPGPPGISGRTGDKGPPGSPGQTGSPGPSGLPGPPGPAGPIGPT
GERGDRGETGPQGMEGPAGPRGKPGAPGVQGEKGDTGATGPKGAKGHRGLIGLQGLPGPS
GPSGDKGVPGVAGPPGPSGEPGPKGPPGRDGGIGLQGIMGPPGPRGPSGEDGSSGAPGPP
GPAGPPGPPGESMGYDAATLAAILNRDQTKGPDPLQGDDSEIPARLFGKEITDDERRELI
TKAYEQLKTSFKKYLKPEGTKESPAKTCRDLAYAHPELPSGEYFIDPNEGDVKDAIVVHC
DMEEKASCVLPKPGMTEEFNWRGRSRGLTWLGEEISPGFEFTYKADNNQLSFLQLLSSSA
SQEITYHCKNSIAVFDASKRSFRNALRLMTTSDTELNARGNNKFRYRVVEDGCKTKSSSW
SATKIRYRTDKPQRLPFVDIGLRDVGEEGQSFKIEVGPVCYS
NT seq
4629 nt
NT seq
+upstream
nt +downstream
nt
atgtggcggctccccgaccccgtgaggcggcccccgctggccgccgcggcctccttgctc
ctgctggctgccgcagctctcgcagaaccggaacctgaagccaaaccccaggaatacaac
tacgacaactacgattacgattattataattacggcgaatatgaatatggacccgatgaa
tcatatgacccttatgaggcggaggcgacacccgacccctatgccacgccggccccgtat
gacccctaccctgaggaggaggaaccttacgatccttacgccacgccggcgccctatgac
ccctacgacccctatgccacaccgtcgccgtatgacccatacgggcgcgatccctatgaa
caaactgaacccccaaccactaccactaccacgaccactaccaccacaaccactacaacc
acacctccgcctccgcctccgccaccgacaacgccgagacgggatctggattacgagaga
agagcgtcccggccgcgacggccaaagggccagcgcccagatcgccggccgacggaagaa
gaaccaacggaaatcgtgggcccaactcagccagaccccaacagaggctcggtaggcgct
tcaggatctccaggtgaacgaggtcctactggaagtccgggcaaccctggcattcccggc
gaccctggccctcctggacccatgcccgacatcacaccatggatatcccagctctcgcag
tcacaaggcggagagaaaggaccatcccttacctatgaaatgcaggctcaagtcggtccc
atcggcccaagaggtcccgcaggtaaccccggtcccgccggtcctcagggtttccagggt
atgcgaggcgaaccaggtgatcccggaccttccggctcaaccggtccacctggtccacgc
ggtctccctggtattcctggaaaagacggagagaacggcgaggatggagctgcaggtccc
ccaggcgctgttggcccccctgggcctcgcggtctccccggaatgccaggccttcctggc
gtgaagggccaccgtggcttccctggtctcgacggcgccaagggtgaacagggatcgtct
ggagacaagggagcctccggtcctcctggacagcctggtcctatcggccccatgggtgct
gctggtcctcgtggcgagcgtggtcgagaaggtccccccggacctcctggtctgcgtggt
attgatggcattgcaggtcccccaggtccccctggtggccccggtaagcccggtcccccc
ggtttccctggtagcgctggcgccaagggtgaccagggtgtacaaggccccaagggatca
caaggtcttcaaggtccacgaggcgagggtggcaaacccggcatccccggagaggcaggc
cctcagggaccctcgggcaaagacggacttaccggagaaaagggagctcctggaacccaa
ggagatgctggtccccccggtttccccggagctcgaggtccccctggccttcctggcagt
cctggtgttcctggcgccaagggcgaaaggggtctgaccggcgaacgaggcttcaaggga
gagttcggcatgaagggtgagggaggaaccccaggcccccgaggcctccccggccccccc
ggatcccccggcaagaggggcaagagaggcatggtcggtcctgctggaggcatgggccct
cagggagaacgaggtccccctggaggtcgaggtctcccaggagctgacggaccccctgga
cccaagggccaaagtggcgacgccggaccccccggaaaccttggacagaagggtcgcgaa
ggaaaccctggtccttctggtatgcctggtagacgcggtctgcgaggccctggaggactt
tcaggtccccctggcaagacaggtcgacccggcgagcgaggtgcccccggcgctgacggt
aaaccaggcgaccaaggaccccagggcattcagggtctcccaggccctatgggaatgcca
ggagcacaaggacagattggcgaaacaggaaaggaaggctcccctggagaaaccggtccc
accggccctcgaggtgaccctggcaaggacggatcagctggacccatcggccagcctgga
cccaccggtcctgccggcgagcgcggtcctcctggtccccctggcgcccgtggattccaa
ggccttcctggtgcccctggaagtgacggcacggccggtaaggacggagaggcgggtctg
caagggcctcgtggtcttcctggcggccctggcttgcgcggtactcgaggcttcccagga
gagcgaggagctcaaggtccacccggagagaatggagcccgaggcgaatctggtcttcct
ggccccgacggaccagcaggtcctccaggtccatctggccaaaagggtcatgccggtcca
tctggtcttgttggtcttcctggtggtcgcggtccagttggtctgcccggagagaaagga
gagaggggaggccttggaagagccggtcctgaaggtcccccaggtcgtcaaggtgaccaa
ggtcctcagggtgtcatgggtcccccaggtccacctggagagccagcagaaaagggagat
cctggtccaccaggtcctcctggcgaggctggtgcaaatggcatgatgggcgagagaggt
cctcagggccaacagggtatccagggcttcccaggtcctcttggacctcctggcgttgga
ggaccgaagggccagcgtggtcttcccggacagaagggatcgcaaggaaatcctggacca
gtgggccagcccggctccaccggttcccagggtctgcccggcctcaacggtgccaaggga
caacgcggagagagcggtcaacgaggcgaacctggtctcatgggtccacctgggcgacct
ggcaccgccggtactcctggatcttcaggagaaccaggtccagctggtctggctggcaac
cctggcatcaagggctcacctggagactcaggacgccctggtcttccaggtccatcaggt
cagcctggtgcccctggacccgagggtcccaagggtgagtccggtccccagggccgaatt
ggtcttgttggaaagcctggtcctcctggaccttcaggagaacgtggccttcctggtcta
cctggcccacctggcccacctggtctccgtggacaaaccggcgctcggggagagcctggt
gcagaaggaaagcgtggcgctgaaggtcccgtcggcccacctggtctcactggtcccccc
ggtgccattggcccaaccggcgacactggctctcctggttcagatggcaagcccggaccg
cccggtatttctggacgcacaggtgacaaaggaccccccggatcccctggacagactggc
agccctggaccgagtggcctacctggacctcctggcccggccggacctattggcccaacg
ggagaacgaggagaccgcggagaaactggacctcagggtatggagggacctgctggccct
cggggcaagcctggcgcacctggcgttcagggcgagaagggagacactggtgcaacagga
ccgaagggagccaagggtcaccgtggtcttattggtctccagggtctgcctggtccatct
ggtccttccggtgacaaaggtgttcctggtgttgctggtccccctggtccctctggtgag
cctggtcccaaaggtccacctggacgcgatggaggcattggtctccagggtatcatgggt
ccccccggtccccgtggtccttctggcgaagacggatcttcaggtgccccaggtcctcct
ggtcctgctggtccccctggtcctcctggtgaatccatgggttatgacgcagccactttg
gcggccatcctcaaccgggaccagaccaagggacctgacccgctgcagggagatgactcc
gaaatcccggcccgcctcttcggcaaggagatcacggacgacgagcgccgcgaattgatc
accaaggcctacgaacagctcaagacctccttcaagaagtacctgaaaccggaaggcacc
aaggagtctcctgcaaagacctgccgcgatctcgcatatgctcatccagagctaccaagt
ggcgaatactttatcgatcctaatgagggtgacgtcaaggacgccattgtggtgcactgc
gacatggaagaaaaggcatcgtgcgtgctgcccaagcctggcatgacggaagagttcaac
tggcgcggcagaagtcgaggcctcacctggcttggagaagagatcagcccaggcttcgag
ttcacatacaaggcggacaacaaccaactgtccttcctgcagctgctctcatcatccgcc
tcccaggaaatcacgtaccactgcaagaattccatcgccgtcttcgatgcttccaagagg
agtttccgcaacgcccttcgactcatgaccacctcagacaccgaacttaacgccagagga
aacaataaattcagatatcgagtggtcgaggacggttgtaagactaaatcgagcagctgg
tccgccaccaagattcgttaccgcacagacaaacctcagcggctgcccttcgtggacatc
ggtctcagagacgtcggtgaagagggccaatcgtttaagatcgaagtcggaccggtatgt
tattcgtaa
DBGET
integrated database retrieval system
