Penaeus chinensis (fleshy prawn): 125031123
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Entry
125031123 CDS
T08118
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125031123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchn03019
]
125031123
Enzymes [BR:
pchn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
125031123
Messenger RNA biogenesis [BR:
pchn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125031123
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
CAF1
DNA_pol_A_exo1
Como_LCP
Motif
Other DBs
NCBI-GeneID:
125031123
NCBI-ProteinID:
XP_047477594
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All DBs
Position
12:complement(25896711..25911856)
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AA seq
541 aa
AA seq
DB search
MVDVTVDNFPQLLPQILQDIKTAAFISLDTEFTGLLADAAFKGSLFDDGLQRYQKLSCNI
RKFMICQMGLAVFKGIPHTNGYTVTSYNIYLCPHSCTSFDPTFMCQTSSLEFLQRFKFDF
NKWLYGGITSMNTDEENELRITLSSVIKGQKIVDLPYTVRDQVNDLGVWAVSANEGDITT
ITQLPEATFQFMLIVSVRHRFSDLWASMQNGEVVIQKVSEDNRQKLEMEDPDGQKLVECF
VDRMLGFTKIFRYLVDTQKPIVLHNCLLDLMLLYKQFYKHLPRSYHIFKSDMHQLFPTIY
DTKLIAAEIKSSLRQADDKAGNLLGNSSLSDLATSLKRDHTALHRPSVHHVPETNKYSGE
EKMLHEAGYDAYLTGSSFLYLAHLYAMLQFPSKLHHRPMSPREHVHALKSFANRVQMQRA
AIPYMELNGHDPKSKRPPWLVIERHPKTIGFSPSYVSSILGQYGFVDVVPHDNKSVLVAA
ASWESTREILKTFRRGGTLKASRYSKLKHSPFIRSLAWSGALVSAGLSSWLIYSTFKKAS
S
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggtagatgttacagtagacaattttcctcagcttcttccacaaatcttgcaagacata
aagacagcagctttcatatcccttgacactgagttcacaggacttttggctgatgccgca
tttaagggaagcctattcgatgatggattgcaaagataccagaaactttcttgtaatata
cgtaaattcatgatatgccagatgggattggctgtcttcaagggaattcctcacacaaat
gggtatactgtgacctcatacaacatttacctctgtccccattcctgtacatcttttgat
ccaactttcatgtgccagacatcaagcttagaatttttacagagattcaagtttgacttc
aataagtggttgtatggaggcatcacttcaatgaatactgatgaagaaaatgagctacgc
ataacattgtcatctgttatcaaaggtcaaaagatagttgaccttccatatacagtacga
gatcaggtaaatgaccttggagtgtgggcagtatcagcaaatgaaggtgatattactact
ataacacaactaccagaagctacgtttcagttcatgctgattgtcagtgtgcgtcacaga
ttttctgatttgtgggcctcaatgcaaaatggagaggtagtaattcagaaagtgtcggag
gacaatcgccaaaagctggaaatggaagatccagatggacagaagttggtcgaatgtttt
gtagacagaatgcttggatttacaaagattttccggtacctggtagatactcagaagccc
attgttcttcacaattgtcttcttgacctgatgctactttataagcaattttataaacat
ctgccaagatcctatcatattttcaagtcagacatgcaccagctcttccccactatatat
gatacaaaactgatagcagctgaaattaagagtagcctaagacaagctgatgataaagct
ggaaatcttcttggaaactccagtttgagtgacctggcaacatcattgaaaagagaccac
acagctttgcacagaccatcagttcatcatgtgccagagacaaataagtacagtggggag
gagaagatgctacatgaggctggttatgatgcatatttaactggatccagctttctttat
ttagcgcatctctatgctatgctgcagttcccctctaaactacatcatcgtcccatgagt
ccacgagaacatgttcatgcattaaaaagttttgcaaatcgagtccaaatgcaaagagca
gctattccatacatggagcttaatggccatgatcccaaatccaagcgtcctccttggctg
gtgattgagagacatcccaagactataggcttttcacccagttacgtgtccagtatcttg
ggacagtatggttttgttgatgttgtgccacatgataacaaatccgttttagttgcagca
gcatcatgggaaagcacaagagaaattctgaaaacatttagaagaggtggtacattaaag
gcatcacgatacagtaaactgaagcattcacccttcataagatctcttgcttggtcgggt
gccttagtgtctgcaggtttaagtagctggcttatttacagcacatttaagaaggcttct
tcctga
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