KEGG   Penaeus chinensis (fleshy prawn): 125031279
Entry
125031279         CDS       T08118                                 
Name
(RefSeq) THO complex subunit 3-like
  KO
K12880  THO complex subunit 3
Organism
pchn  Penaeus chinensis (fleshy prawn)
Pathway
pchn03013  Nucleocytoplasmic transport
pchn03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pchn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    125031279
  09122 Translation
   03013 Nucleocytoplasmic transport
    125031279
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pchn03019]
    125031279
   03041 Spliceosome [BR:pchn03041]
    125031279
Messenger RNA biogenesis [BR:pchn03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     125031279
Spliceosome [BR:pchn03041]
 Complex C
  Other components
   EJC/TREX
    125031279
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    125031279
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st ANAPC4_WD40 WDR55 Beta-prop_WDR3_2nd EIF3I WD40_Gbeta Beta-prop_WDR19_1st Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_Aladin Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd Beta-prop_IFT122_1st Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st eIF2A Beta-prop_IFT140_1st Beta-prop_EML RMC1_N Beta-prop_Vps41 Beta-prop_WDR35_TULP_N Beta-prop_WDR75_1st PROPPIN Tricorn_2nd WDR90_beta-prop_4th NBCH_WD40 Beta-prop_EIPR1 Beta-prop_HPS5 Beta-prop_TEP1_C Beta-prop_WDR11_1st PD40 WD40_RFWD3 Peptidase_S9_N Cytochrom_D1 Beta-prop_NUP159_NUP214 KNTC1_N Beta-prop_SCAP Beta-prop_ELP1_1st DPPIV_N Beta-prop_Nup120_160 WD_LRWD1
Other DBs
NCBI-GeneID: 125031279
NCBI-ProteinID: XP_047477899
LinkDB
Position
12:complement(36530412..36540492)
AA seq 330 aa
MGSSYMAYFEEMKSYFQTHNKQKEYIGHNSKVHTIGWNADGRRLASGSYDKCVTIFVFDV
HRETLRKDYTYKGHGDSVDQLCWHPTHSEQLTSASGDKTVRIWDTRTHKCSATINTKGEN
INITWSPDGQTIAVGNKEDLVSFIDVRSQKIRHEQQFKFEVNELSWNNANDLFYLTNAQS
GQGYIHIYNYPEMELVHSIHAHPGNCICIKFEPQGRYFATGSADALVSIWDAQELYCRRT
LPRLEWPVRTLSFSYDGQLLASGSEDQTIDIAHVDTGERVAHISVAYPTFTLAWHPRLFL
LAYACDDKDDRERDRDAGTVKLWGLSGERS
NT seq 993 nt   +upstreamnt  +downstreamnt
atggggtcgtcttatatggcttatttcgaggagatgaaaagctacttccagacgcacaat
aagcagaaggagtacataggacacaactccaaagtccacaccatcggctggaatgcagat
gggagaagactggcctcgggatcatatgataaatgcgtgacgatttttgtgtttgatgtc
catcgggagacgctgaggaaagactatacatacaagggccatggggacagtgtggaccag
ctgtgttggcaccccacacactcagagcagctcacctcggccagtggggacaagacagtc
agaatatgggacacgaggacgcacaaatgctctgccactataaatacgaaaggggagaac
atcaacatcacctggtccccagatggtcagacgattgctgtcggaaacaaagaagacctg
gtgtcgtttatagatgtccgtagccaaaagatccgccacgagcagcagttcaagtttgag
gtcaatgagctgtcatggaataatgcaaatgacctcttctacctcaccaatgctcaaagt
gggcaaggatatattcatatatacaattacccagagatggagttggtgcactccatccat
gcccatcctggcaactgcatctgtattaagtttgaaccccaaggtagatactttgccaca
gggtctgctgatgctcttgtttccatatgggatgctcaggaactctactgcaggaggaca
ttacccagattggagtggcctgttcgtaccttgagcttttcctacgatggccagctctta
gcatcaggaagcgaggaccagaccatagacatagctcatgttgacacaggggagagggtt
gcacatatcagtgtggcttatccaacctttaccttagcttggcatccacgactcttcctt
ctggcatacgcctgtgacgacaaggatgaccgtgagcgagaccgagatgcaggaacggtg
aagctttggggtctgtcaggcgaacgtagctga

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