Penaeus chinensis (fleshy prawn): 125031279
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Entry
125031279 CDS
T08118
Name
(RefSeq) THO complex subunit 3-like
KO
K12880
THO complex subunit 3
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03013
Nucleocytoplasmic transport
pchn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125031279
09122 Translation
03013 Nucleocytoplasmic transport
125031279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchn03019
]
125031279
03041 Spliceosome [BR:
pchn03041
]
125031279
Messenger RNA biogenesis [BR:
pchn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
125031279
Spliceosome [BR:
pchn03041
]
Complex C
Other components
EJC/TREX
125031279
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125031279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
ANAPC4_WD40
WDR55
Beta-prop_WDR3_2nd
EIF3I
WD40_Gbeta
Beta-prop_WDR19_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_Aladin
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_IFT122_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
eIF2A
Beta-prop_IFT140_1st
Beta-prop_EML
RMC1_N
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Beta-prop_WDR75_1st
PROPPIN
Tricorn_2nd
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_HPS5
Beta-prop_TEP1_C
Beta-prop_WDR11_1st
PD40
WD40_RFWD3
Peptidase_S9_N
Cytochrom_D1
Beta-prop_NUP159_NUP214
KNTC1_N
Beta-prop_SCAP
Beta-prop_ELP1_1st
DPPIV_N
Beta-prop_Nup120_160
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
125031279
NCBI-ProteinID:
XP_047477899
LinkDB
All DBs
Position
12:complement(36530412..36540492)
Genome browser
AA seq
330 aa
AA seq
DB search
MGSSYMAYFEEMKSYFQTHNKQKEYIGHNSKVHTIGWNADGRRLASGSYDKCVTIFVFDV
HRETLRKDYTYKGHGDSVDQLCWHPTHSEQLTSASGDKTVRIWDTRTHKCSATINTKGEN
INITWSPDGQTIAVGNKEDLVSFIDVRSQKIRHEQQFKFEVNELSWNNANDLFYLTNAQS
GQGYIHIYNYPEMELVHSIHAHPGNCICIKFEPQGRYFATGSADALVSIWDAQELYCRRT
LPRLEWPVRTLSFSYDGQLLASGSEDQTIDIAHVDTGERVAHISVAYPTFTLAWHPRLFL
LAYACDDKDDRERDRDAGTVKLWGLSGERS
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggggtcgtcttatatggcttatttcgaggagatgaaaagctacttccagacgcacaat
aagcagaaggagtacataggacacaactccaaagtccacaccatcggctggaatgcagat
gggagaagactggcctcgggatcatatgataaatgcgtgacgatttttgtgtttgatgtc
catcgggagacgctgaggaaagactatacatacaagggccatggggacagtgtggaccag
ctgtgttggcaccccacacactcagagcagctcacctcggccagtggggacaagacagtc
agaatatgggacacgaggacgcacaaatgctctgccactataaatacgaaaggggagaac
atcaacatcacctggtccccagatggtcagacgattgctgtcggaaacaaagaagacctg
gtgtcgtttatagatgtccgtagccaaaagatccgccacgagcagcagttcaagtttgag
gtcaatgagctgtcatggaataatgcaaatgacctcttctacctcaccaatgctcaaagt
gggcaaggatatattcatatatacaattacccagagatggagttggtgcactccatccat
gcccatcctggcaactgcatctgtattaagtttgaaccccaaggtagatactttgccaca
gggtctgctgatgctcttgtttccatatgggatgctcaggaactctactgcaggaggaca
ttacccagattggagtggcctgttcgtaccttgagcttttcctacgatggccagctctta
gcatcaggaagcgaggaccagaccatagacatagctcatgttgacacaggggagagggtt
gcacatatcagtgtggcttatccaacctttaccttagcttggcatccacgactcttcctt
ctggcatacgcctgtgacgacaaggatgaccgtgagcgagaccgagatgcaggaacggtg
aagctttggggtctgtcaggcgaacgtagctga
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