Penaeus chinensis (fleshy prawn): 125031705
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Entry
125031705 CDS
T08118
Name
(RefSeq) regulator of nonsense transcripts 2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03013
Nucleocytoplasmic transport
pchn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125031705
03015 mRNA surveillance pathway
125031705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchn03019
]
125031705
Messenger RNA biogenesis [BR:
pchn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
125031705
mRNA cycle factors
P-body specific factors
125031705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
125031705
NCBI-ProteinID:
XP_047478568
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All DBs
Position
13:28976468..29013809
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AA seq
1259 aa
AA seq
DB search
MDGVKSERRGGKSWRKEREERERKRVGTKAANVSKESEEKKENDDPESRREEEMAKKKLD
EENKLKEQEELAALAREKEEEERKQKEEEERQQREEAARKLEEDRVFLLNYIQECEDRLA
KKKELRAQNLAVVKDRPELNTALLDSSLKKNTAFIKKLKNLTESQHDSLVKDLQSLNLTK
YVSEVAQAVVETKLKMSDISTAVHLCSLLHQRYHDFAPTLLENWQKVLTPKKDEKISNMS
KLRVDLRLYAELITAGIFLPKEGLPLLGNVLTTLVTSDKEEHQNIAVLLTFCRHCGEDYM
GLVPRKIRLLADQFHMTIPKSDFLPPERQKNVRQLLKDYFVSLSKHLFHDHKELQQVEKH
NRRLLQTRGELGQDRVNLAENLASGLTKLVANTQQMAELLDEDMPELPEDKSQGDDLGLG
DIGMGEGGEIPDGGTAVLWEDEDTRAFYENLPELKALIPSILYSDSEKPTAVPAEETPTE
EVVDTVEEEELDSVAPAEDDAEEVLPPEFPPEEEPEDSLTGTGPSSNKVLLDAFLSALPN
CINRDLIDSAAMDFCLRLNTKPSRKKLVRALFLVPRTRLDLLSFYSRLVATLQPLMPDLA
TDLVNMLRQDFKYQVRKKDQINIESKIKVVRFIGELVKFKVYPRSEALQCLRMLLQDFSH
HHVEMACNLLETCGRFLYRIPDSHHRTKIYLEQMMRKKTVKAFDPRYNTMIENAYFYVNP
PDSGPETTKKERPPMHQYIRKLLYDDLCKSNTEKILRQMRKMHWEDPLVSSYIVKCLTAI
WNAKFYNIRCIANLVAGLISHHDWVGPAVVDGILEDIRIGLEVNHPKFNQRRVAAVKYLG
ELYNYRVIESSIIFKVLYLFISFGVVFDPSSYSEYDPPEHLFRLRLVCTLLETCGQFFSS
GSSKRRLDCYLCYFQHYYQYKRSLNIWSEEQEFPWQIEHLVRDTIAAVRPKLQMYINLEE
AQKAVTHLNNQIVAKAIEQVPSLRQFLQPDADNEGLHTITEEGDSQVPGLDGDVLENLEE
EEEFEDTEEGEMDWSESHGDSLTPSQHSQPCRSTVDEEGEGGLTGDAYEEIEGGGESLEG
ELLEGDMKVNLKHVDCKEDNDFMSAFDRMMAESILERTSNIPKAGQFDISVPVHVKSTTK
KTYDQLLTEGTEETKPVVNFVLMTRSGNKQQYNNVEMPLDSEIVTKLRSREEAERAEKEK
VKRMTLEINERQEEEEAAEIMQQAQRPATMNFNRDRRPKYQHPKGAPDADLIFGPKKIR
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atggatggagtgaagagcgagcgtcgcggaggcaagagctggcggaaggagagggaggag
cgggagaggaagagggtcggcactaaggcagccaacgtctccaaagaatcagaagagaag
aaagagaatgacgacccagagagccgcagagaggaagaaatggcaaagaagaagctggac
gaagagaacaagctgaaggagcaagaggagttggcagccctggcaagggagaaggaggag
gaagagaggaagcagaaagaggaagaggaaagacagcagagggaagaagcagccaggaag
ttggaggaggacagggtattcctgttaaactacattcaagagtgtgaggaccgtcttgct
aagaagaaagaacttcgagcacaaaacttagcagttgtaaaagacagaccagaattaaac
acagctcttctagactcaagtttaaagaaaaatacagcatttataaagaaattgaaaaac
ctaacagagagccagcatgactccctagtgaaggacctccaaagcctaaacctgaccaag
tatgtgagtgaggttgcacaggctgtagtggagaccaagctgaagatgtcggacatatcg
acggctgtccacctatgctcactcctacatcaacgctaccatgactttgctccgactctc
ttggagaactggcagaaggttctcactccaaagaaagatgaaaagattagcaatatgagt
aaacttcgtgtcgatctgcgactgtatgctgagcttataactgctgggatttttctacca
aaggagggccttccgctcctaggcaatgtgctgacaactttagtgacgtcagacaaagag
gaacaccagaatatagctgtactgctgacattttgccgtcactgtggagaggactacatg
ggacttgtgccccgcaaaatcagactccttgccgatcagttccacatgacaatccccaaa
agtgatttcttgcctcctgagagacagaagaatgtacgtcagcttctaaaggactatttc
gtatcactaagcaaacatctgttccatgatcacaaggagttacaacaggttgaaaagcac
aaccgcaggctgttgcagacacggggagaacttgggcaggatagagtcaacctagcagaa
aacctggccagtggattgaccaaacttgttgccaatacccagcagatggcagaacttctg
gatgaggacatgcctgagcttccagaagacaagagtcagggagatgacttgggtcttggt
gatatcggcatgggggaaggaggcgagattcctgatggagggacggctgtgctatgggaa
gatgaagatactcgagcattttatgaaaatctcccagaacttaaggctctcattccctcc
atactatatagtgactctgaaaagcctacagcagtcccggctgaagaaaccccaactgag
gaagtggtagacacagtcgaggaggaggagctggacagcgtagctcctgccgaggatgat
gcagaagaagtcctgcccccagagttccccccagaggaggaaccggaggactccttaaca
ggcactgggccatcatccaacaaggtgctacttgatgctttcctcagtgccttgcccaac
tgcattaaccgggacttgattgacagtgcggccatggacttctgcctcagactcaacaca
aagccaagcagaaagaaactagtcagagccttgttcctggtgccaagaacaagattagat
ttattatccttctactctcgtctggtggcaacgcttcagcctcttatgccagacctagct
actgatttagtcaacatgttacggcaagattttaagtaccaagtgcggaagaaggaccaa
ataaatatcgagtcaaaaataaaggttgtgagattcattggagagttagttaagttcaaa
gtgtatccacgcagtgaggctttacagtgcttgagaatgttactgcaggacttcagccat
catcatgtggagatggcatgcaacctcttggagacttgtggccggttcctttatagaata
ccagattctcaccatcgcacaaagatttacttggaacagatgatgaggaagaaaacagtg
aaggcatttgatccaaggtacaacaccatgatagagaatgcctacttctatgtgaaccct
cctgactctggaccagagacaacaaagaaggaacggccacccatgcaccagtacattcgc
aagctgctttacgatgatctctgcaagtcaaatacagaaaagattttgcgacagatgcga
aagatgcactgggaagacccattagtttcaagctatatagtaaaatgtttgacagcaatt
tggaatgcaaagttttataatataagatgcattgcaaacttggttgctgggcttatatct
caccatgattgggttggccctgctgttgttgatggcattttggaagacatccgcattggc
ctggaggtcaaccatcccaaattcaaccagagaagagtagcagctgtgaagtacctgggt
gaattgtataactatagggttatagaaagttctattatcttcaaggttctttacctcttc
atctcctttggtgtggtattcgacccaagttcgtatagtgagtacgatcctcctgaacac
ctgtttcgtctgaggttggtgtgtacgttgttggaaacatgtgggcagttctttagttca
ggatcaagcaaaagacgtctagactgctatttatgctacttccagcattactatcagtat
aagagatctctcaatatatggagtgaggagcaagagttcccatggcagattgagcactta
gtcagagacacaattgcagcagtgagaccaaagcttcagatgtacatcaacctggaggaa
gcacagaaagctgtgactcaccttaataatcagattgttgcaaaggcaattgagcaagta
ccaagtcttcggcaattcttacaacctgatgcggataatgaaggacttcacacaataaca
gaggaaggtgattctcaagtaccaggcctggatggagatgttttggagaacttggaggag
gaggaggagttcgaggacacagaggaaggggagatggattggagtgaatcacatggtgac
tccctcacgccctcgcagcacagtcagccctgccgcagcacagtggatgaggagggtgaa
ggcggactaacaggagatgcttatgaggagatcgaaggaggaggagagagcttagaggga
gagttactggaaggagacatgaaggttaacctcaagcatgttgactgcaaggaggacaat
gactttatgtctgcatttgaccgcatgatggcagagagcatcttggagcgcacatcgaac
atcccaaaggctggccagtttgatatatccgtaccagtccatgtcaaatccacaaccaag
aaaacttacgaccagttactgacagagggtacagaggaaactaagccagtagtgaacttt
gtcctaatgacccgctctggcaataagcaacagtataacaatgttgaaatgccacttgat
tcagagatagtgaccaaacttcgttcccgggaagaggctgaacgagcagagaaggagaaa
gtgaagcgcatgaccttggagatcaatgagcgccaagaggaggaggaagcagctgagatc
atgcaacaggcccagagaccagccacaatgaacttcaaccgtgacagacgaccaaaatat
cagcaccctaagggagcacccgatgcagacctcatatttggtcccaaaaagattagatga
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