Penaeus chinensis (fleshy prawn): 125033460
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Entry
125033460 CDS
T08118
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125033460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchn03019
]
125033460
Enzymes [BR:
pchn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
125033460
Messenger RNA biogenesis [BR:
pchn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125033460
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
Motif
Other DBs
NCBI-GeneID:
125033460
NCBI-ProteinID:
XP_047480939
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All DBs
Position
16:complement(12193150..12222808)
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AA seq
585 aa
AA seq
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MNASLVVTGKCIKLRNRGLTTSDLTSGRSFRLCHELDVSCSKQSFIDDFQNVLPDVEKAI
ERADFLSIDAEFTGLRRDASFAYSELDTAEERYSHATFCFYILGRTGEIYVYDNSSLRFL
ANNGFDFAKLYKEGLQYMTVKEENEKRSELRSQSLDPPIPSPVKIAEESAKKFLTETEEK
MIDFMADETRDVLVIPGSTLTGFFRKILYNNIASKYQNILIRNVTTEGERNVEIRKFETQ
QNRRNFLQKEREKLLNDQVGFTHVVRKIIESGKVLVGHNLVLDLLHLINKTVHPLPEHLE
NFKTLVKTNIPTVYDTKLIAKDPPFCVDIPFTALGSLYKDLREKYEPPTFAPEEGYASHS
GEEEGKAHNAGYDAFMTGVCFVTMVKKLDGMNWASKSVVKSKHLALYANRLNNMNSYDIP
YLNIVGPDVHPNRGHIFSVECPSSWTPMHVHGLFHMLKSLKIIWMNSTHLYVIPMEEIDS
TMCRRLLKTVRASCPPLVRVRMYDDRPTPKRKSESDDTSFTAIGSSNHPKEFKRLKSVGS
SDQLSQMSLESPVEEDPPAAICDQEAKKQSKRGPAEGVFAVPEEW
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcgagtttagttgtaactgggaaatgcataaagttaagaaacaggggccttacc
accagtgaccttaccagtggccgcagctttcgactttgccacgaacttgatgtgtcttgt
tccaaacagtccttcattgatgattttcagaatgtactcccagatgtggaaaaagcaatt
gagagagcagattttttgtccattgatgccgagtttactggattgcgacgggatgcttca
tttgcatatagtgaactggacactgcagaagaaaggtattcccatgccactttctgcttc
tacattttagggaggactggtgaaatttatgtttatgacaacagtagcctcagatttttg
gcaaataatggatttgattttgccaagttatataaagagggattgcagtacatgactgtt
aaggaagaaaatgaaaagagatctgagctgaggagtcaatccctagatccacccatacct
tcaccagtcaagatagcagaagagagtgccaaaaagttcttgacagaaactgaagaaaaa
atgatagacttcatggcagatgaaactcgtgatgttcttgtcatcccaggctctactctg
acaggcttcttcaggaagattctttacaataatattgcatcgaagtaccagaatattctc
atccgtaatgtaacaactgagggtgagagaaatgttgaaattaggaaatttgaaacgcaa
caaaatcgaagaaacttcctgcaaaaagaaagggagaaactactaaatgatcaggttggc
ttcactcatgttgtccgcaagatcatagaaagtggaaaggtacttgttggacacaatctt
gtgttggacttgctgcatttaatcaataaaacagttcatcctttaccagaacatttagag
aacttcaagacattagtcaagactaatattccaacagtgtatgatacaaagctcatagca
aaggatccaccattttgtgtagatattcccttcacagccttaggatctctttataaggat
ctgcgtgagaaatatgaacctccaacttttgctccagaggaagggtatgctagtcacagt
ggtgaagaagagggcaaggcacataatgctggatatgatgcattcatgactggagtctgt
tttgtgacaatggtgaagaagctagatggtatgaactgggcaagtaagtctgttgtgaaa
tcaaaacatctggctctgtatgcaaacaggttaaacaacatgaattcatacgatatccca
taccttaacatagtaggacctgatgtccacccaaatagaggtcacatattcagtgttgaa
tgcccctcttcttggacaccaatgcatgtccatggactttttcacatgctaaaatccctg
aagattatttggatgaacagtacccatctttatgttattccaatggaagaaattgatagt
acaatgtgcaggagactcctaaagacagtaagggccagctgtccaccattagtgcgtgtc
aggatgtatgatgacagaccaacccctaagcgcaagtctgaatcagatgacacaagcttt
actgcaattggttccagcaatcatcctaaggagttcaagaggctgaaaagtgttggcagt
tctgatcagctgtcccagatgagcctagagtctcctgtggaggaagatccccctgcagca
atatgtgaccaggaggcgaagaagcaaagtaagagaggccctgctgaaggcgtgtttgct
gtgccggaagaatggtga
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