KEGG   Penaeus chinensis (fleshy prawn): 125036088
Entry
125036088         CDS       T08118                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
pchn  Penaeus chinensis (fleshy prawn)
Pathway
pchn03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:pchn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    125036088
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pchn03021]
    125036088
   03036 Chromosome and associated proteins [BR:pchn03036]
    125036088
Transcription machinery [BR:pchn03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     125036088
   Coactivators
    SAGA/TFTC/STAGA complex
     125036088
Chromosome and associated proteins [BR:pchn03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     125036088
    STAGA complex
     125036088
    TFTC complex
     125036088
    SAGA complex
     125036088
    SLIK complex
     125036088
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd EIF3I TFIID_NTD2 WDR55 NBCH_WD40 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_TEP1_C Beta-prop_WDR75_2nd Beta-prop_Nup120_160 Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_WDR19_1st Ge1_WD40 Beta-prop_WDR35_TULP_N WD40_RFWD3 Beta-prop_EIPR1 Beta-prop_DCAF4 Beta-prop_VPS8 WD_LRWD1 Beta-prop_RIG_1st Beta-prop_IP5PC_F Beta-prop_IFT140_2nd Beta-prop_DCAF12 eIF2A Beta-prop_NWD2_C Beta-prop_NUP159_NUP214
Other DBs
NCBI-GeneID: 125036088
NCBI-ProteinID: XP_047484440
LinkDB
Position
2:complement(1852350..1863391)
AA seq 653 aa
MRKVRTEKVMAHVSDYLKRRNLESGGPGGSVTLTEQQVGILGLVSPSAPNTFTFSTTSTQ
HTHVDHQYVRLKSWMMEASEPCRSELSQVLFPLFVHLYLELVAATGRQAANKFFKKHYQV
FLVNRDYENTLSQVVSASSINSSGDMNSSPVIQNLKSGKYLVRLSELTLNYFLRYLKSSE
NPTLLQIFNTYIEVEVDESGAGSSGAVFRGPDLNTSSSTALVNGHTPDSLSSDASAYAAD
GMDCSPEELRKVKDIMARVRSAQPTAPSLCVYTVTNAYNGLSCANVNAEGQLLACGFEDS
VIKLWKLTPPLHDIGFGKKKTVVGPRGGISHTLLACDDSRIEDSGEKDDDDKEEEATATE
IRNGGRRRNRGGELFALRGHSGPVLDTAFSHDSNYLLSVSEDCSMRLWDLNSGNAVALYR
GHSYPVWCVGVAPLTMYVATGSYDTTARLWSTDATYPLRTFSGHTRAVDCVAFHPNGTYL
ATGSCDRSIRLWQVTDGDVARILPHHKSAINTMSFSPNGKYLASGSEDGTVVVWDLAGGR
VMTEISSSNQVNSGNTGTGTPHQDSIMNVCWSTDSSLLVSASSDGCVRTSHLKQTPASND
GTNSWELNEVGQVQCSGSTNGGSGNNGASGVLLHTSLTSHNYLTSVIALDVER
NT seq 1962 nt   +upstreamnt  +downstreamnt
atgaggaaagtgaggacagagaaagtgatggctcatgtcagcgactacttgaagaggaga
aatctcgagagtgggggaccaggaggaagcgtcacgctaaccgaacaacaggtggggatt
ttgggcctggtttctccctcggcccccaacaccttcaccttctccaccacctccacccag
cacacgcatgttgatcaccagtatgtcaggctaaaatcgtggatgatggaggccagtgag
ccatgccgatccgaattgtcccaagttctgtttccgctctttgttcacctgtaccttgag
ctggtagcggccacagggagacaagcggcaaacaagttcttcaagaaacattatcaggtg
ttcttggtgaaccgtgattatgaaaatacactctctcaggttgtaagtgcatcttctata
aattcttcgggagacatgaattcttctcctgttatacagaatctcaagagtggcaagtac
ctggtacgtttaagtgaactgactttaaattactttctgcgatatctgaagtcgagtgag
aaccccacactgttgcagatattcaatacatacattgaagttgaggtggatgagtcaggt
gctggaagttcaggagctgtgttcagagggcccgatctgaacacttcttcctcaacagct
ttagttaatggtcacactccagactcattgtcctctgatgcctctgcttatgcagctgat
ggaatggattgtagcccagaagaactgcgcaaagtgaaagacatcatggctcgcgttcgg
tcggcccagcccactgccccttcattgtgtgtgtatacggtcacaaatgcttataatggc
ctgagttgtgctaatgtgaatgcggaaggacagcttttagcctgtgggtttgaagacagt
gtaattaaattgtggaaattgacaccccctttgcatgatatagggtttggaaagaaaaaa
acagtagttggacccagaggtgggatatcgcacacattacttgcatgtgatgattctcgc
attgaagatagtggtgaaaaggatgatgatgacaaagaagaagaagccacagctaccgag
atccgtaatggaggaaggagaagaaatcgtggtggggagctttttgctcttcgtggacac
agtgggcctgtgctggacacagcattcagtcatgattcaaattacttgttatcagttagt
gaagattgctccatgagactgtgggacttaaatagtggtaatgcagtggctctgtataga
ggtcattcatatcctgtgtggtgtgtgggtgtagcccctctcactatgtacgtggcaacg
ggctcatatgatacaactgcaagattgtggtccacggatgcaacataccccctacgcacc
ttttcaggtcacacaagagctgtagattgtgtggctttccatcccaatggcacttactta
gctactggatcctgtgaccgcagtattagactctggcaagtcactgacggtgatgtagca
cgtatccttcctcaccacaagtcagcaatcaacactatgtcattttctccaaatggaaag
tacctggcctctggcagcgaagacggcacagttgttgtctgggacctcgctggtggacgc
gttatgacagaaattagcagtagtaatcaagttaatagtgggaacactggcacaggtact
cctcaccaagattcaatcatgaatgtgtgttggtctactgactcatccctccttgtgtct
gcatccagtgatggctgtgtgcggacaagtcatctaaagcaaaccccagcaagcaatgat
ggaaccaattcctgggaactgaacgaagttggccaggttcagtgcagtggaagtacaaat
ggaggaagcggcaataatggagcgtcgggagtcctgctccacacgtctctaacgtctcac
aattacctcacttctgtcattgctctcgatgtggagagatag

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