Penaeus chinensis (fleshy prawn): 125036561
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Entry
125036561 CDS
T08118
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125036561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchn03019
]
125036561
03041 Spliceosome [BR:
pchn03041
]
125036561
Messenger RNA biogenesis [BR:
pchn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
125036561
Spliceosome [BR:
pchn03041
]
Complex B
Other components
Prp19-related factors
125036561
Complex C
125036561
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
Suf
NRDE-2
ARM_TT21
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
125036561
NCBI-ProteinID:
XP_047485222
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All DBs
Position
21:12900050..12909114
Genome browser
AA seq
845 aa
AA seq
DB search
MIMDASSIIIEADDVQYEEELLRNPFSVKHWQRYIEHKKDAAPEKLNIIYERALLQMPGS
YKLWHLYLRLRMEQVKGRCVTDPEFESVNNTFERALVFMHKMPRIWIDYCRFLMNQRKIT
RTRKTFDRALCALPITQHNRIWPLYLKFVMLYNIPETAVRVWRRYLKLCPEDAEDYISYL
MSIGRLEEAAKRYEWCVNTDSFTSKYGKSKHQLWSELCELISKNPQETSLKNAEAIIRHG
LQRYTDQVGMLWNSLAEYYIISALFERARDVYEEGLRSVMTVRDFTQVFDAYAQFEELTL
KKRMEEVDVEVDVGEETELELRLARYEDLMQRRPLLLNSVMLRQNPHNVLEWQKRVTLYE
GKPKMIVATYMEAVKTIDPKQATGKLFSLWVNFAKFYEENNQIVDARIIFERATEVLYVK
VDDLASVWCEWAEMEIRHGNEEEALKLMKRATAPPPQKVAYNDESEPVQRRVYKSLKLWS
MYADLEECLGTFKSCKAVYDRIIDLRIATPQIIINYGMFLQENSYFEEAFKAYEKGISLF
KWPYVYDIWNTYLTKFLERYKGTKIERARDLFEQCLEKCPPNYARNLFLLYAKMEEEHGL
ARHAMQVYSRATKAVPPEEKLSIYNIYLQHAQQIYGVTKTREIYQEAIDDLPDEGCREMC
LRFAEMERKLGEIDRAREIYAYCSQICDPRITPEFWAKWTDFEVAHGNEDTMKELLRIKR
SMQAKYNTQVNMMSAQMLASAGSVAGTVSDLAPGAKDGMRMLEARAVAMNKEEQMSTSVP
PSAAGGSKIMFVRGSTTKRDDEVADTARTANPDEIDLDDDDDDDESDMPQQREVPAAVFG
ELKKE
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgattatggatgcctcctctataattatagaggctgatgatgtgcagtatgaggaggag
cttcttcgtaatcccttttctgtaaagcattggcagaggtacatagaacacaagaaagat
gctgcaccagaaaaacttaatatcatatatgaaagggctcttctccagatgccaggcagc
tataagctgtggcacctttatttgagattgcgtatggaacaagttaagggacgatgtgtc
acagatccagagtttgagagtgtaaataatacctttgaaagagccttagtattcatgcac
aaaatgcctcgcatatggatagactactgcagatttttgatgaaccagcgaaagataaca
agaaccagaaagacatttgaccgtgcattatgtgctctacccattacccagcacaaccgc
atatggccactttacctcaaattcgtcatgttatacaatattccagagacagctgtaaga
gtctggagaagatatctaaagctttgccctgaagatgcagaggattacataagctatctt
atgtccattggacgactggaggaagctgccaagagatatgagtggtgtgttaataccgat
tcctttacctccaagtatggcaaatcaaaacatcagctatggtcagaactctgtgagtta
atctccaaaaacccacaggaaacaagtctgaaaaatgcagaggccatcattcgccatggc
ctgcagcgttacactgatcaggtcgggatgctttggaactccttggcagaatattatatc
atcagtgcactctttgaaagggcaagagacgtctatgaagaaggtctacgaagtgttatg
acagtaagagatttcacacaagtgtttgatgcttatgctcagtttgaagaattaacacta
aagaaacgaatggaagaagttgatgttgaagtggatgtaggagaagaaacagagttggaa
ttacgcctggcgcgatatgaggaccttatgcaacggcggcccctcctgttgaattctgtt
atgcttcgccagaacccacacaatgtattggaatggcagaagcgtgtaactctctatgaa
gggaagccaaaaatgattgtagcaacatatatggaagctgtgaagacaattgatccaaaa
caagccacaggaaaacttttttcattgtgggtgaactttgcaaagttctacgaagaaaat
aaccagattgtggatgcgcgaatcatctttgaaagagcaactgaagttctctatgttaaa
gtagatgaccttgcaagtgtgtggtgcgaatgggctgagatggaaataagacatggaaat
gaagaggaagctctcaagctgatgaagcgagcaacagcacctcccccacaaaaggtggca
tacaatgatgaatctgagcctgtccagcgacgcgtctacaagtctctaaaactgtggtct
atgtatgctgacttagaagagtgtttaggcacctttaagtcctgcaaggctgtgtatgat
cgaattatagatctgcgaattgccacaccacaaattattataaactatggcatgtttttg
caggaaaacagctattttgaggaagcattcaaggcctatgaaaaaggaatttctctcttc
aaatggccctatgtatatgacatatggaacacatatctcacaaaattcttagagcgatac
aagggcactaagattgaaagagcgagggacttgtttgaacagtgcttggaaaagtgtcca
ccaaattatgcacgtaatctgttcctcctgtatgctaaaatggaagaagaacatggactg
gcaaggcatgcaatgcaggtatacagtcgggccactaaagcagttccaccagaggagaag
ttgtccatttacaacatctatttacaacatgcacaacagatatatggtgttactaaaaca
agagagatttaccaggaagcaattgatgacctacctgatgaaggttgtcgagaaatgtgt
ctacggtttgccgaaatggagcgtaaattaggggagattgatcgggctcgtgaaatctat
gcttactgcagtcagatatgtgatccaagaatcacaccagaattctgggcaaaatggact
gattttgaggttgctcatggcaatgaagacacaatgaaggaactgctgcgtataaagcga
tctatgcaggccaagtacaacacccaggtgaacatgatgtcagcccaaatgttagcatct
gccggttcagttgctggcacagtgtctgatctagcaccaggagccaaggatggaatgagg
atgcttgaggcccgtgctgtggccatgaacaaagaggaacagatgtccacttctgttcct
ccatcagcagcaggaggttccaagatcatgtttgtccgtggttcaactaccaaaagggat
gatgaagttgcagacacagctcgcactgcaaatcctgatgaaattgatttagatgatgac
gatgatgatgatgaaagtgatatgcctcagcagagagaagtcccagcagcagtgtttggt
gaattgaaaaaggagtag
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