Penaeus chinensis (fleshy prawn): 125036852
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Entry
125036852 CDS
T08118
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03013
Nucleocytoplasmic transport
pchn03015
mRNA surveillance pathway
pchn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125036852
09122 Translation
03013 Nucleocytoplasmic transport
125036852
03015 mRNA surveillance pathway
125036852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchn03019
]
125036852
03041 Spliceosome [BR:
pchn03041
]
125036852
Enzymes [BR:
pchn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125036852
Messenger RNA biogenesis [BR:
pchn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125036852
Spliceosome [BR:
pchn03041
]
Complex C
Other components
EJC/TREX
125036852
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125036852
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
125036852
NCBI-ProteinID:
XP_047485692
LinkDB
All DBs
Position
22:18984388..18995892
Genome browser
AA seq
427 aa
AA seq
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MADQETELLDYEEDEDAVEAGVGETTEAAPAKKDVKGTYVSIHSSGFRDFLLKPEILRSI
VDCGFEHPSEVQHECIPQAVLGMDILGQAKSGMGKTAVFVLATLQQIDPVDGQVSVLVMC
HTRELAYQIAKEYERFSKYMPNTKVGVFFGGLNVQKDEETLKNNCPHVVVGTPGRVLALV
RNKKLNLRHLKHFVLDECDKMLEQLDMRRDVQEIFRNTPHEKQVMMFSATLSKEIRPVCK
KFMQDPMEVYVDDEAKLTLHGLQQHYVKIKENEKNRKLFELLDALEFNQVVIFVKSVQRC
MALAQLLVEQNFPAIAIHRAMQQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVF
NYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSEESDAKILNEVQERFDVNITELPDEIEL
SSYIEGR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggccgaccaggagactgaacttctcgactacgaggaggatgaggatgcggtggaggca
ggagtaggagaaacgacggaggctgccccagccaaaaaggatgtcaagggtacctatgtg
tctatccactcctcaggcttcagggatttcctgctgaagccagaaatcctgaggtccatt
gtagactgtggctttgagcatccttctgaagtgcagcatgagtgtatccctcaagctgtg
ttgggcatggacatcttgggccaggctaagtcgggtatgggaaagacggcagtgtttgtg
ctggcaacacttcagcagattgaccctgttgatggtcaggtgtcagtgctggtaatgtgt
catacacgagagttggcttaccagatagccaaggagtatgagagattcagcaagtacatg
cccaacaccaaagtgggggtgttcttcggaggcctgaatgttcagaaggatgaagagacc
ctcaagaacaactgcccccacgttgttgtgggcacccctggccgtgttcttgctctggta
cgcaacaagaagctcaatctccgccacttgaaacactttgtattggatgaatgtgacaag
atgctggaacagcttgacatgcgacgagatgtgcaagaaatcttccgcaatactccacat
gaaaagcaagtgatgatgttcagcgccaccttgagcaaggagatccgccctgtttgcaag
aagttcatgcaagatcccatggaagtatatgttgatgatgaagccaagttgactcttcat
ggtctgcagcagcactacgttaaaatcaaggaaaatgagaagaatcgaaaattgtttgaa
ttacttgatgctttagagttcaaccaggttgtgatattcgttaagtcagtccagagatgc
atggccttggcacagctattggttgagcagaacttcccagccattgctatccaccgtgcc
atgcagcaagaagaaagactgagtcgttaccagcagttcaaggatttccagaagcgcatc
ctggtggcaacaaacctgtttggtagaggaatggatattgagcgagtgaacatcgtgttc
aactatgacatgccagaagacagtgacacataccttcacagagtagcaagagctggtcga
ttcggaaccaagggcttagctgttacatttgtgagtgaagagagtgatgcaaagatcttg
aatgaggttcaggagagattcgatgtaaacatcaccgagctacctgacgagattgagctt
agctcatacattgaaggtcgttaa
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