Penaeus chinensis (fleshy prawn): 125038739
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Entry
125038739 CDS
T08118
Name
(RefSeq) helicase SKI2W-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125038739
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchn03019
]
125038739
Enzymes [BR:
pchn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125038739
Messenger RNA biogenesis [BR:
pchn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125038739
mRNA degradation factors
3'-5' decay
Ski complex
125038739
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
ResIII
MTR4-like_stalk
Motif
Other DBs
NCBI-GeneID:
125038739
NCBI-ProteinID:
XP_047488271
LinkDB
All DBs
Position
3:complement(43654432..43663420)
Genome browser
AA seq
1214 aa
AA seq
DB search
MGSLAWLPGGLPPVLPTLKEQIEEYLLMPEELPIHAPIHSRRWFPRTPNPRRLFSLTLFP
VTSCLEVERDPATGHITGVHEVSNYDAGATAKNSMSMRRAPGPPEEMVRGSSTNLPFWPG
GFSEPTLDKESTEAEHVLDLTNLMTKHPRLSRGITFEEPEPPPQEEAKEPEEEKKSTDLV
VSISDMLMVDESVLKIFDVKEEQTKKPATLTLEGLNEEDSNLVETFKIEPAPKKEEFVLN
ISETPVEVELSGPSTEWAEKVDVHAPVDDFHTRVPNPACTYPFELDIFQKQAILHLENRE
SVFVAAHTSAGKTVVAEYAIALTLKHMTRAIYTSPIKALSNQKYRDLKIKFEDVGLLTGD
IQINPKASCLIMTTEILQSMLYNGSDLIRDLEWVIFDEVHYINNAERGHVWEEVLIMLPE
RVSIVLLSATVPNTIEFADWIGRIKKRKIYVISTTKRPVPLEHFLYTGMGGKSKDERFLL
IDAQGKFVTKGYNNAVTAKNEKKSKMQQQQGPKHTRQHMGEKQEKNMWIGLIDHLSKREL
LPIVAFTLSKKRCDSNASQLLSQDLTTSAEKGEIHTFIKRCTERLQGADRELPQVVYMQE
LLTKGIGVHHSGILPILKEVVEMLFAKGLVKLLFATETFAMGVNMPARCVVFDSIRKHDG
TGFRDLLPSEYIQMAGRAGRRGLDTTGTVIVLCKNDVPEMGDLHRMMLGKPTKLESQFKL
TYSMILNILRVERISVEDMMKRSFSEAITYKNQSQYQAELELYTEQLKQEPDFNCMMCKS
IEQYYAAAKEFVEQRANVFNLIHGFPGVVKAVAPGRILLICYEQYQSYLACVLKIDAKDK
TKMTVFVLKEKTRHNYSKHELMAKEALSASEAMFDPLEEPSEHGFLEITFKHIAALTDRV
VKIDGDKVIDNIKKRQIPRFKDDPPSQSVMELLKEMQRLNESGGENLACLDLLNDLGIRE
IAAVSNIHRMNILRKKAVEMPCLDCTQFREHFNMMYKKLHLREEIGRLKFLMSEEALQLH
PEYQMRIQVLKTLGYIEENNTVTLKGRVACEMGNHELMITELVLENVFAESPVEIISGLL
SSLVFQDRNNSDAELTPELLKGVQQFKGVAKRIGEVQKECGLKEAVGDYVDQFNFGLTEV
VYQWAKGMAFKKIMELTDVQEGITVKCIQRLNEVLKDVRNAARIIGDPSLMQKMEEASTA
IKRDIVFTPSLYTQ
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atggggagcctggcatggctgcctgggggcttgcctcctgtcctgcccactctcaaggag
cagattgaagagtacctcttgatgccagaggagctgcccatccatgcccccatccactct
cggcgatggttcccccgaacgccaaaccccaggcgcctcttcagtctcacactctttcct
gtaacttcgtgccttgaggtggaacgtgaccctgccaccggccatattacaggagtacac
gaagtgtctaactacgatgcaggagccacagccaaaaactccatgtcaatgcggcgtgct
ccaggacctccagaagagatggtgagggggtcgtcgaccaatctgcctttctggcccgga
gggttctcagagcccacactggacaaggagtccacagaagcagaacacgtgctggacctg
accaacctgatgaccaaacaccccaggctgtcacgaggcatcaccttcgaggagccagag
cccccaccccaggaggaggccaaggaacctgaggaggagaagaagagcactgacctggtg
gtcagcatctcagacatgctgatggtggatgagagtgtgctcaaaatctttgatgtgaag
gaggagcagaccaagaagccagccacactcaccctggagggcctgaacgaagaggactcc
aacctggttgaaacctttaagatagaaccggctcccaagaaggaggagtttgtcttgaac
attagtgaaacccctgtggaagtggagctctctgggcccagtactgaatgggctgagaag
gtcgatgttcacgcccctgtggatgattttcatacgcgtgtacctaatcctgcctgcact
tatcccttcgagcttgatatatttcagaagcaagcaattttgcatctggaaaatcgagag
agtgtcttcgttgctgctcacacttcagcgggtaaaaccgtagtggctgagtatgccatt
gcactcactcttaaacatatgactagggccatatatacctcaccaattaaagccttatca
aatcagaaatacagagacctgaaaataaagtttgaagatgtaggtttgttaacgggtgat
attcagattaatcctaaggcatcctgtttgattatgacaactgaaatcttgcagtctatg
ctgtataatggtagtgatttaattcgtgatttggagtgggttattttcgatgaggttcac
tacatcaacaatgcagagagagggcatgtatgggaagaagttctgattatgcttcctgag
agagtgagcattgtattgctctcagctactgttcccaacaccattgaatttgctgattgg
attggcagaattaagaagaggaagatctacgtgattagcaccacaaaacggcctgtgccg
ctggagcacttcctctacactggaatgggtggaaagagtaaggatgaacgcttcctcttg
atagatgcccaaggaaagtttgtgactaagggctacaataatgcagttaccgcaaagaat
gagaaaaagagtaagatgcagcagcagcagggtcccaagcacacgaggcagcatatgggt
gagaagcaggagaagaacatgtggattggcctcattgaccatctcagcaagcgagaactc
ctgcccattgtggcgttcacactttccaagaagaggtgtgacagcaatgccagtcagctg
ctcagtcaggacctgaccaccagtgctgagaagggagagatccatacctttatcaagagg
tgcacagagaggctgcagggagcagatcgagagctaccacaggttgtctacatgcaggaa
cttctcaccaagggcattggggttcatcacagtggaattttgcccattttgaaagaagtt
gtggagatgctgtttgccaagggtctagtgaagctgctgtttgccacagagacctttgct
atgggagtcaacatgcctgcgaggtgcgttgtgttcgactccatccgtaagcatgatgga
acaggcttcagagacttactccctagtgaatacattcaaatggctggtcgtgctggtcgc
agaggtcttgacacaacagggactgtgattgttctgtgcaagaatgatgtgccggaaatg
ggtgaccttcaccgcatgatgttaggcaaacccaccaaattggaatcacagtttaagctc
acttactcaatgatcctcaacattttacgtgtggaaagaattagtgttgaagacatgatg
aagagatcgttctcagaagccatcacttacaaaaatcaaagtcagtatcaggctgagctt
gaactatatactgaacagctgaagcaagaacctgactttaactgtatgatgtgtaagagc
attgaacaatattatgcagctgccaaagagtttgtggagcagcgcgcaaatgttttcaac
ctgattcatggttttccaggtgttgttaaggcagtggcaccaggaagaattttactcata
tgttatgaacaatatcagtcttaccttgcttgcgttctgaaaattgatgcaaaagacaag
accaagatgactgtgtttgtgttgaaggaaaagaccaggcataattactcaaagcatgaa
ctcatggcaaaggaggctctgagtgcctcagaagcaatgtttgaccccttggaggaaccc
tcagagcatggctttttggaaattaccttcaagcatattgctgcgttaacagaccgggtt
gtgaagatagatggggataaagttatcgacaatattaagaaacggcagatcccacgattc
aaggatgaccctccatcacagtctgtcatggagctgctcaaggagatgcagaggttgaat
gagtcaggaggtgagaatctggcatgtctggacctactgaatgacctaggaatcagggaa
atagcagccgttagtaatattcacagaatgaacatcttaaggaagaaggccgtagagatg
ccttgcttggactgcacacagttcagggagcacttcaacatgatgtacaagaagttacat
ctgcgggaggaaattggacggctgaagttcctaatgtctgaagaggctttgcagttgcat
ccagagtaccaaatgaggatccaggtgctcaagacactaggctacattgaggagaacaac
acagtcactctcaagggtcgcgtggcttgtgagatgggcaaccatgaactcatgatcact
gagctggtgctggagaacgtgtttgctgagagcccagtggagatcatctctggccttctg
tcaagcttggtcttccaggacaggaataatagtgacgctgagctcacaccagagcttctg
aagggcgtccagcaattcaagggtgtggccaaacgcattggtgaggtgcagaaggagtgt
gggctgaaggaggctgtgggcgactatgttgaccagttcaactttggtctcacagaggtg
gtctaccagtgggccaagggcatggcattcaagaagatcatggagcttacggatgtccaa
gagggaatcacggtcaagtgcattcagcgcctgaacgaggttctgaaggatgtgcgaaat
gcggccaggatcattggtgacccaagtctcatgcagaaaatggaagaagcgtcaacagcc
atcaagagggacattgtcttcacccccagtctgtatacacaataa
DBGET
integrated database retrieval system
