Penaeus chinensis (fleshy prawn): 125042109
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Entry
125042109 CDS
T08118
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pchn
Penaeus chinensis (fleshy prawn)
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pchn03016
]
125042109
Enzymes [BR:
pchn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
125042109
Transfer RNA biogenesis [BR:
pchn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
125042109
Prokaryotic type
tRNA splicing ligases
125042109
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Adeno_PX
Motif
Other DBs
NCBI-GeneID:
125042109
NCBI-ProteinID:
XP_047493532
LinkDB
All DBs
Position
31:26228294..26246661
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AA seq
461 aa
AA seq
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MVVRQYNDELKFLERMMPNCWRIKKGFQPNMNVDGIFYVNDHLEKLMFEELRNACRPGMV
GGFLPAMKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDMDNPKAVVSPGGVGFD
INCGVRLLRTNLMENDVTPIKEQLAQSMFDHIPVGVGSKGIIPMTARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMAQADPAKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAASKMGIEEKGQVCVMIHSGSRGFGHQVATDALVAMEKAMKRDGIDTNDRQLACARIN
SPEGQDYLKSMAAAANFAWVNRSSMTFLSRQGSTRAFPPHHPLIPVDYQLTGQPVLIGGT
MGTCSYVLTGTEQGMMETFGSTCHGAGRALSRAKSRRNLDYTEVLNRLDQQGISIRVASP
KLVMEEAPESYKNVTDVVDTCHAAGISKKCIKLRPIAVIKG
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggtcgttcgacagtacaatgatgagctcaagttcctcgagcgcatgatgccgaattgc
tggcgaatcaagaaggggttccagcccaacatgaatgtggatggaatattttatgtgaac
gatcacctagagaaactcatgtttgaggagctacgaaatgcctgtcgtcctggcatggtt
gggggctttttgccagctatgaagcaaattgcaaatgttgcagctttacctggcattgtc
gggaggtcggtaggactacctgatgtccactctggctatggctttgcaattggtaatatg
gcagcttttgatatggataacccgaaagctgtagtgtctcctggaggagtaggttttgac
ataaactgtggagttcgtcttcttcgtacgaacttgatggaaaatgacgttacgcctatc
aaggaacagctggcccaatcgatgtttgatcacattcctgtgggtgtgggttcaaaaggt
atcatccccatgacggcacgagacttggaggaagccctagagatgggcatggactggtcg
ctaagagaaggttatatatgggctgaggataaggaacactgtgaagagtatgggagaatg
gcacaggctgatcctgccaaagtttcaatgcgagctaagaaaagggggctgccacagcta
ggtaccctgggtgctggcaaccattatgcagagatccaggtagtggatgaaatatacgac
aagtgggcagccagcaagatgggaatcgaggagaaaggccaagtgtgtgtcatgattcac
tcaggctccaggggatttggccatcaagtagctacagatgcacttgttgccatggaaaag
gccatgaagagagatggcattgacacaaatgatcgacagttggcatgtgccaggatcaat
tctcctgaaggccaagactacctcaagtcaatggcagcagcagctaattttgcctgggtt
aatcggtcatccatgacgttcctcagccgacagggttctacacgtgcttttccaccacat
cacccactgattcctgtagactatcagttgactggtcaacctgtcctcattggaggaaca
atgggcacctgttcctatgtactcacaggtacagaacagggcatgatggaaacgtttggg
tcaacttgtcatggcgcaggacgtgccctttctcgtgccaaatcacggaggaacttggac
tacacagaagtcctaaataggcttgaccagcaaggcataagtattagagtagcttcgccc
aaattagtgatggaggaggcaccagaatcatataaaaatgtaacggatgttgttgacacc
tgtcatgcagctggtatcagtaagaaatgtattaagttacgtccaattgctgttataaaa
ggttag
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