Penaeus chinensis (fleshy prawn): 125043746
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Entry
125043746 CDS
T08118
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125043746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchn03019
]
125043746
Enzymes [BR:
pchn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
125043746
Messenger RNA biogenesis [BR:
pchn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
125043746
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
CbiA
MMR_HSR1
ATP_bind_1
AAA_16
CTV_P13
AAA_10
nSTAND3
AAA_24
Motif
Other DBs
NCBI-GeneID:
125043746
NCBI-ProteinID:
XP_047495959
LinkDB
All DBs
Position
34:1394721..1401763
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AA seq
420 aa
AA seq
DB search
MSDKEFRLDPDSELRFEVEGKQDTVDLTLVNGKAEVFGTELAPDKPYTFFPGAKVAVFTW
HGCALKLSGPTEGTYVAKETPMVMYLNTHACLERLRRHADEGLNRGEDTRGPVTMVVGPG
DVGKSTLCRILLNYAVRMGRRPIFVDLDIGQGSIAIPGTIGALLVERAADVGEGFSQEAP
LVYNFGHLSPASNMTLYNILVSRMAATIQDKMVGNRKVAASGVVINTCGWIKNEGYKSLT
HVAQAFEVDVIIVLDQERLYNELVRDIPFIRVVFLPKSGGVVERTQSMRASARDDRIREY
YYGLRTKYHPHSFEVKMSTLQIYKIGAPALPDSCMPADMKVDDHMTKLVPVEPSVKLKHH
MLAVSLATEPEDLLTSNVAGFICVLEVDEDLKVMKVLSPQPKPLPKTILILTEIQFMDSS
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacaaggagttccgcttggacccagacagcgaactcaggtttgaggtggaaggc
aagcaggatacagttgatctcacattggtaaatggcaaagctgaagtgtttggcacagaa
ctagcaccagataagccgtacaccttcttccctggagcaaaggtagcagtgttcacctgg
catggctgtgctctcaagctgtctggcccaacagagggaacatatgtggcaaaggaaaca
ccaatggttatgtaccttaatacacatgcatgcttggagcggttgcgcaggcatgcagat
gaaggtcttaaccgaggagaggataccagaggaccagtaaccatggttgttggtccagga
gatgtaggaaagtcaactctctgcagaattctcctcaattatgctgtgcggatgggacgt
cgtcccatctttgtagatttggatattggacaaggatccattgcaattccaggaactata
ggtgcactgcttgttgagagagctgctgatgttggggaaggcttttctcaagaggctcct
cttgtgtataactttggccacctgagtcctgcatccaacatgactctgtacaacattctt
gtctcacgcatggctgccaccattcaagataagatggttggcaatagaaaagttgctgcc
tcaggggtggtcatcaacacatgtggttggattaaaaatgaaggatacaagagtctgaca
catgttgcgcaggcctttgaggttgatgtgatcattgtccttgaccaggagagactgtat
aatgaacttgtcagagatattcccttcattagggttgttttcttgcccaagagtggaggt
gtggtagagagaacccagtccatgagggcatccgctcgtgatgaccgcatcagagaatac
tactatgggttgcgcaccaagtaccacccacacagttttgaggtgaagatgagcacgctc
cagatatacaagattggtgctccagccctccctgattcctgcatgccagctgatatgaag
gttgacgatcacatgaccaaacttgtacctgtagagcctagtgtaaagttaaagcatcac
atgttggctgtaagtcttgcaacagaaccagaagacctcttgacctcaaatgtcgcagga
tttatttgcgtactcgaagttgacgaagacctcaaagtcatgaaggtcttgtctccacaa
ccaaagccactcccaaaaacaattttgattttgacggaaattcagttcatggactcatcg
taa
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