Penaeus chinensis (fleshy prawn): 125043762
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Entry
125043762 CDS
T08118
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
125043762
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pchn03400
]
125043762
DNA repair and recombination proteins [BR:
pchn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
125043762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
ENTH
Motif
Other DBs
NCBI-GeneID:
125043762
NCBI-ProteinID:
XP_047495990
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Position
34:complement(28495493..28508181)
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AA seq
1283 aa
AA seq
DB search
MAKQATLFTFFSKSNTPNKPKREETTPNKVKLKGNDFKALDLVWAKLDGYPWWPGLVCDS
PSEKTFMRKGQIHVQFFDNPPTRGWVRETFLKPYCPPGENGIPTYKDPKWIRAIGEADSA
KELPVEDRNLLIVEMVPSDEEDEAMETDEDDSDKSKENVDANISGRKGSRKNSKESHEEP
KQKRRRIILHSDSESEDDYKPGKDDESGDGSASSGVDEDNVSEPETESEIDSPVKAPSNK
RKRPAPGGRNLNSSLASSPSVPKTPSSTPKISQGTKSKLSLFAAKETPAKAEDTTDNYDY
MNYPWLKPEGIRDRDRRRPDHPDYNPRTLCVPEDFLNQQTPGLRQWWDLKSRHYDTVLFF
KMGKFYELFHMDAMIGVQELGLLMMKGEKAHSGFPEIAYGRYSSTLIEKGYKVARIEQTE
TPEMMEKRCKNMGRPTKFDRVVRREVCQISTRGTRVYSVLDGEASESSTNYLLAISEKTK
AGAGDVREFGVAFIDTSIGIFHIGQFSDDRHDSRLSTLMAHYPPAQILYERGRLSQKTQK
LVTMSVPANLREALVPEKEFWTASKTLTFLADGTYFKDEEGGSLQWPKEIKKMLDKSDTL
GKTPSPEWELGLSALGALVWYLMDCRLEEQLLTRKRFETYSPLDEAVSTRQGKKESVPAF
ISGRHHMVLDGTTLSNLEVFENNSGGFEGTLIDRLDRCSTPFGKRLLRSWLCAPLCSPSS
INSRLDAIEDLRNNPEVLEEVTPQLKGLPDLERILSKIHSQGLKRSKNHPDSRAIFFEDE
KYNKRKVEDFLAALNGFKATVQIMKTFKGIASSLQSDLLKKCVSNTKDGGKFPVLKEALD
FFENAFDHHEAKREGKIIPSKGVDKEFDEAAEQIAETKASLADYLKQQCKYFGAKVVYWG
NDKKRYQLEVPDHACKKAGNEYELVSQKKGFKRFWTPKTKDLLADMISGEEHHRTALKDI
ARRIFEQFDNHHEKWEAVVQCISVLDVLISLTRYSQEINSVRPAISIPNEELKPFIEIRD
GLHPCVVTTFSGDEFIPNDVVLGGNSEDAHSPLVLVTGPNMGGKSTLMRQTALICILAQL
GSFVPASSCQLTPVDRVFTRLGASDRIMMGESTFFVELAETSSIIQHSTNHSLVLVDELG
RGTATYDGTAIASAVVEALVKLKCRTLFSTHYHSLVDDFADVKNVSLGHMACMVEGENEE
DPSQETITFLYKFTGGACPKSYGFNAARLADLPEEVIRRGSQKARELEKNNIKKRTFTEV
FRGEGTGKLNLKHSIKKIIDIAA
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atggccaaacaggcgacgttatttacattcttttcgaagtcaaatactccaaataagccc
aagcgcgaggagacaacgccgaacaaagtcaaattgaaggggaatgatttcaaggccttg
gacttggtatgggcaaagctggatggctacccttggtggccaggcctggtgtgtgacagt
cccagtgaaaagaccttcatgcgcaagggccagatccacgtccagttttttgataatcca
ccgactcgagggtgggtcagagaaacgtttctgaaaccctattgtccacctggagaaaat
ggtattcccacctacaaggatcccaagtggatcagagccattggggaagcagatagtgcc
aaggaactccctgtggaggaccgcaatcttctgattgtggaaatggtgccatctgatgag
gaggatgaggcaatggaaacggatgaggatgatagtgacaagagcaaggagaatgttgat
gccaatattagtgggaggaaaggcagcagaaagaatagcaaggaatcacatgaagaacca
aaacagaaaaggaggagaattattttacattctgatagtgaatctgaagatgattataag
ccaggaaaggatgatgaaagtggagatggttcagccagctctggtgtggatgaagataat
gtatcagaacctgagactgagtctgagattgattctcctgtaaaggcaccaagtaataaa
cgaaaaagaccggcacctggagggcgtaacctgaattcatctttggcttcatcaccttca
gtacccaagacaccaagcagcacacccaaaatttctcaaggaacaaaatcaaaattatca
ctctttgctgcaaaagagactccagctaaggcagaggatactacagataattatgactac
atgaattacccatggctgaaaccagaaggtataagagatcgtgataggcgtcggccagat
cacccagactataatccaagaactctgtgtgtccctgaagatttcctgaaccagcagact
ccaggtctgaggcagtggtgggatctcaaatctcgtcattatgatacagtactgttcttc
aagatgggtaaattttatgagctgtttcatatggatgctatgattggagtccaagaactt
ggcctacttatgatgaagggtgaaaaggcacattcaggttttcccgaaattgcttatgga
agatattcatccactttgattgagaaaggttacaaagttgcacgtattgaacaaactgaa
accccagaaatgatggagaaaagatgcaaaaatatgggtcgtccaacaaagtttgaccgt
gttgttagacgtgaagtatgccagattagtaccagaggaactcgagtttacagtgttttg
gatggagaagcctcagaatcctcaacaaattatcttctggctatttcagagaagacaaaa
gctggggctggtgatgttcgtgagtttggtgtagccttcattgacaccagcattggaatc
ttccacattggccagttttcagatgaccgccatgattcacggttaagcaccctgatggca
cactatccaccagcccagattctctatgaacgaggacgactatcacagaagacacaaaaa
cttgttacaatgtcggtgccagccaatttgcgggaggccctggtgcctgagaaagaattt
tggacagctagcaaaacacttactttcttagctgatggcacatatttcaaggatgaggag
ggaggatctttgcagtggcctaaagagattaagaaaatgttagacaagagtgataccctt
gggaaaactccatctccagaatgggaacttgggttgtctgccttaggtgctcttgtttgg
tacttgatggactgtcgcttagaggagcagttgcttactaggaaaaggtttgaaacctac
agtcccctagatgaagcagtatcaaccagacaagggaagaaagaatcagttcctgctttt
attagtgggaggcaccacatggtcctggatggcacaaccctgagtaacttggaagtgttt
gagaataacagtggtggctttgaaggaaccctcattgacagacttgacagatgctccaca
ccatttggtaaaagattactacgcagctggttgtgtgcccctttgtgtagtccctctagc
ataaatagtcgtcttgatgccattgaagacttgcgaaataacccagaagttttagaagaa
gtaacaccacagttaaagggcttgcctgatctggagagaattttatccaaaatacactcc
caaggtctgaaacgtagcaagaatcatccagatagccgggcaattttctttgaagacgaa
aagtacaacaagagaaaggtggaagacttccttgctgctcttaatggatttaaagcaact
gtacaaatcatgaagacttttaaagggattgccagctctctgcagtcagacctactgaag
aaatgtgtcagtaatacgaaagatggtggaaagttcccagtgctcaaagaagctttggat
ttctttgaaaatgcatttgatcatcatgaagccaaacgggaaggaaagattatcccaagc
aaaggtgtggataaagaatttgatgaagcagcagaacagatagcggaaactaaagctagt
ttagcagactatctcaaacaacagtgtaaatattttggtgcaaaggttgtttattggggc
aatgacaaaaagagataccagcttgaagtcccagatcatgcttgtaagaaagctggcaat
gaatatgaactagtgagtcagaagaaaggattcaagcgattctggactcccaagacgaaa
gacttgcttgcagacatgatctcaggtgaagaacaccatagaacagcattgaaggatatt
gcacgcagaatcttcgagcagtttgataaccatcatgagaaatgggaagcagtggtccag
tgtatatcagttctggatgtactcatttctctcactcgatattctcaagagatcaatagt
gtcaggccagccatttctatacccaatgaagaactaaaaccattcattgagattcgagat
ggtcttcacccttgtgttgtaactaccttcagtggagatgaatttattcctaatgatgtg
gtacttggtggaaacagtgaagacgctcactccccattagtcctggtaacaggtcctaac
atgggtggtaaatcaacactcatgagacagactgccctcatatgcatccttgctcaattg
ggttcatttgtgccagcaagttcctgccagttaacccctgttgaccgagtatttacaaga
cttggtgcctcagatagaatcatgatgggagaatccacattctttgttgaacttgctgaa
acgtcctccattattcagcattctacaaatcactcactggttttggtggatgagcttggt
cgaggtacagcaacatatgatggaacagccattgcttcagcagttgtagaagctcttgtg
aagttaaaatgtcgtacactcttctcaactcactatcattctttagttgatgactttgct
gatgtgaagaatgtctcattagggcatatggcttgtatggttgaaggagagaatgaagaa
gatccctctcaggaaacgataactttcctgtacaagtttacaggaggtgcatgtcctaag
tcctatggatttaatgcagcccgacttgctgatctgccagaggaagttattcgacgtgga
agtcagaaggctcgggaactcgagaagaataacattaagaaacgaacatttacagaagta
tttaggggagagggtacaggaaaacttaatcttaagcattccataaagaaaataattgac
attgctgcctga
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