KEGG   Penaeus chinensis (fleshy prawn): 125043793
Entry
125043793         CDS       T08118                                 
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4-like
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
pchn  Penaeus chinensis (fleshy prawn)
Pathway
pchn03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:pchn00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    125043793
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pchn03021]
    125043793
   03019 Messenger RNA biogenesis [BR:pchn03019]
    125043793
Transcription machinery [BR:pchn03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     125043793
Messenger RNA biogenesis [BR:pchn03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     125043793
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 Torus zf-CCCH_2 zf-CCCH_3 zf-CCCH_RBM22 zf-CCHC zf-CCCH_4 zf-CCCH_12 zf-CCHC_4 zf-C2H2_10 zf-CCCH_DUS3L
Other DBs
NCBI-GeneID: 125043793
NCBI-ProteinID: XP_047496046
LinkDB
Position
34:14556462..14570119
AA seq 274 aa
MEIIVANVDKITFDIETQLEEQVGAQLLPFPGMDKSVAAVCTFYMRGNCSKSVNCPFRHV
CGDRTVVCKHWLRGLCKKGDRCEFLHEYDMSKMPECYFYSRFNACHNKECPFLHINPDMK
MKDCPWYDRGFCRHGPQCRNRHVRRVLCMNYFAGFCPEGSNCKFMHPRFELPQVTDDKQQ
PHKKLGITCHYCGEAGHKLSHCFRANPELREQNAIISLASGGPRTQPGKENSGPDTQNDG
SNRLDNIVCFKCGQQGHFANRCSKGQFAFLSSGN
NT seq 825 nt   +upstreamnt  +downstreamnt
atggagattatagtggcgaacgtcgacaaaatcacgttcgatatagagacacagttggag
gagcaagtgggagcccaacttctccctttccccggcatggataaatccgtggccgcagta
tgcacattttatatgcggggaaattgcagcaaaagcgtgaattgccctttccgccatgtg
tgtggagacaggacagtggtttgtaaacattggcttcgaggtctttgcaagaagggagat
cgttgtgaatttcttcacgagtacgacatgtcaaagatgcctgagtgttatttctattcg
agatttaatgcttgccacaacaaggagtgtccatttcttcacattaatcctgacatgaaa
atgaaggattgtccgtggtatgatagaggattctgtcgccacgggccacagtgtaggaat
cgccatgttcgccgtgtactgtgcatgaactactttgctggtttctgtcctgagggttct
aattgtaaattcatgcacccgagatttgaactgccacaagttacagacgacaagcaacag
cctcacaagaaattaggaataacatgtcattactgtggagaggctggccataaactgtct
cactgcttcagagcaaatccagagttgcgggaacaaaatgccattattagcctagcatca
ggtggcccaaggacacaacctggaaaagaaaactctggacctgatactcaaaatgatgga
agcaatcgcctggataatattgtttgtttcaagtgtggacagcaaggacattttgccaac
agatgttcgaaaggacagtttgccttcctcagttctggaaattaa

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