Penaeus chinensis (fleshy prawn): 125044436
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Entry
125044436 CDS
T08118
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125044436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchn03019
]
125044436
03012 Translation factors [BR:
pchn03012
]
125044436
Enzymes [BR:
pchn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125044436
Messenger RNA biogenesis [BR:
pchn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125044436
Translation factors [BR:
pchn03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
125044436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
Helicase_C
HA2_C
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
AAA_16
ABC_tran
NACHT
PhoH
TsaE
AAA_23
Motif
Other DBs
NCBI-GeneID:
125044436
NCBI-ProteinID:
XP_047497063
LinkDB
All DBs
Position
35:complement(18118353..18143194)
Genome browser
AA seq
1068 aa
AA seq
DB search
MYGRREGRGGYRDGGGDGGGGWRGESGGGWGGGRGRGRGGGGGGGGGGRGRGRGGGGGGR
GRGERPPPHLKGKEIGLWYAQRSKDRQEKDVNLLPTLSMDASQVRTVGRMLDSLDEKDYS
GRGGNRPEHRAGASSQPEPDDDLSDEWDKRISSIVKKEFKDDDNTDVAGSSSGGADSFSN
PDDWIQDNTQKRKISAGQEQEKRQRSDAFAQRVDNMMESDFKQAYMANVHGNQMRDASGL
SALKKDQMGLVRKEAVDEKLYEDMMQQQNCPKYQKMLEARKKLPSYKMRDEIVDTVRDNQ
VVVISGETGCGKTTQVAQFLLEDAVADGQGSTCRIVCTQPRRISAISVAQRVADERGENL
GKSVGYQIRLEATHPRPEGSILFCTTGIVLQWLQSDPLLSQVSHLVLDEIHERDMLSDFI
IAIAKDLIRVRSDLKVILMSATLNAELFSEYFGGCPMLHIPGFTFPVKEFYLEDVIEMTR
FKFEDERDVPVWVRKSNKNKDNDFEGMIAPYVRNLERSGKYSCHTLDELYKSTSEKLNLD
LVLELLRVISRKEPGAVLVFLPGWADISKLHTLIQGDRSFSRSSHLVIPLHSLMPSVNQR
EVFNRPPPGVRKIVLATNIAETSITIDDIVYVINAGRIKMKNYDKEANLVTLLPEWVTLA
NARQRRGRAGRVQDGVCFHLYSRAREMLLDEYPLPEIQRTRLEEIILHVKILRLGSVKPF
LAKLMMPPDPSVVDKSLEMLQAINALDESENLTPLGFHLARLPVDPLTGRMLLMAAIFSC
VGPILTIASALSFKDPFSVPLGKERIVDEIKKKMSRGTKSDHLMLVNVYDGWEDAWRHRE
ARDYCWDNFLSSAVLEQLRNMRRQFMGLLYEHKFVNSKDPQAAEANRNSDNIALVRAIIT
SGLYPNVARVLPQRGRPNPHKPRSIRTQYERRVSLHPKSVNEKEREYESPWLMYREKIKS
SKVYIHDSSMVPNYPLLFFGRKLNYVDGIINVDDFVRVRCSRHVAHLVQSLRTQLDELLE
YKISHPGVTRWNKSSKEGALLHTIVDLISSEKISSSQDNYDYYDDGDD
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgtatgggagacgtgaaggaagaggaggctaccgtgatggtggtggagatggtggtggt
ggttggagaggagaaagtggtggaggatggggaggaggtcgaggaagaggaagaggagga
ggaggagggggaggaggaggaggcaggggaaggggaaggggaggtggggggggaggaaga
ggccgaggggaacgacctccaccccatttaaaaggcaaagaaataggcttgtggtatgct
cagcgctcaaaggatcgccaagaaaaagatgtgaatcttttaccaacattgtccatggat
gctagtcaagtacggactgttggacgaatgcttgactcccttgatgaaaaagattactct
ggcagaggtggaaatagaccagagcatagggctggtgcaagttcccagcctgagccagat
gatgacctcagtgatgagtgggacaaacgtatatcatctattgtgaagaaggaatttaaa
gatgatgacaacactgacgttgctggtagcagctctggaggtgcagattctttctcaaat
ccagatgactggattcaagacaacactcagaaacgtaagatttcagcaggccaagaacag
gagaagaggcagcgcagtgatgcctttgcacagagggtagataacatgatggagtcagac
ttcaagcaggcttacatggccaatgtccatgggaatcagatgcgtgatgcaagcggtttg
tcggctttaaagaaagatcagatgggcctcgtgaggaaagaggcagtggatgaaaagctt
tatgaagacatgatgcaacaacagaattgtccaaagtatcagaaaatgttagaagcacgt
aagaagcttccatcatataagatgcgggatgaaattgtagatactgttcgagataatcaa
gttgtagttataagtggagaaacaggatgtggtaaaactacacaggttgctcagtttttg
ctggaagatgcagtcgctgatggacaaggatctacttgcaggattgtttgcacccaacca
aggcgtatatcagcaatatctgttgctcagagggttgcagatgaacgtggagagaatctg
ggcaagagtgttgggtaccagataaggcttgaagccactcatcctcgacctgaaggctcc
atcctgttctgtaccactggtatcgtacttcagtggctacagagtgatcccctcctcagt
caggtgtctcacctggttcttgatgaaattcacgagagagatatgttgtcagatttcatt
attgcaattgcaaaggacctgatcagagtaagatccgatctgaaggtaattttaatgagt
gcaacgctgaatgcagaacttttttctgaatattttggtggctgtcccatgctgcatatt
cctggttttacatttccagtaaaggagttttatcttgaagatgttatagaaatgacaaga
ttcaagtttgaagatgaacgagatgtaccagtatgggtgagaaaaagcaataaaaacaag
gataatgactttgaaggcatgatagcaccttacgtcagaaacttagaaaggagtggaaag
tactcctgccacaccctagatgaactgtacaagtcgacaagtgaaaagcttaatctggac
ctggtgcttgagttgttgcgcgtcatcagccgtaaggagcctggagctgtgcttgtcttc
ctgccgggttgggcagatatttccaagctacacacactcatacaaggcgacagaagtttc
tctagaagtagtcatttggtcatccctctccactctctcatgccctctgtcaaccagcgg
gaagtgttcaatagacctccaccaggtgtacgcaagattgttttagcaacaaacatagct
gaaactagtataactatagatgatattgtgtacgtgataaatgctggacgtatcaagatg
aaaaattatgataaagaagctaacttggtgacactgttgcctgaatgggtcactcttgct
aatgccaggcaaagacgaggcagagctggtcgtgtgcaagacggtgtttgtttccatctg
tattcacgagcccgagaaatgttgttggatgaataccctctgccagaaattcagcgtacg
cggcttgaggaaatcatcctgcatgtgaagatcctgcgcttagggtcagtcaaaccattc
ttggcaaagctcatgatgccaccagatccgagtgtggttgataaatctttggagatgctt
caagctattaacgccctggatgagagtgagaatttaactccattaggtttccacttggcc
cgcttgcctgtggatcctttgactggccgaatgttactcatggcggcgatattctcctgt
gtgggccccatattgactattgcctcagcactctcatttaaagatcctttctcagttcct
ttgggaaaggaacgtattgtagatgagataaaaaagaaaatgagtcgtggcacaaagagt
gatcatttgatgctagttaatgtctatgatggatgggaggatgcgtggcgccacagagaa
gcaagggactattgctgggacaacttcttatccagtgctgtgctagaacagctgaggaac
atgaggcgacaatttatgggtctcctttatgagcacaaatttgtgaattctaaggatcca
caagcagctgaagccaatcggaactctgacaatattgcccttgttcgcgccatcatcaca
agtggtctgtacccaaacgttgcacgtgttcttcctcaaagaggacgccccaacccacac
aaaccccgtagcatccgcacgcaatatgagcgcagagtatcattacatcccaagtctgta
aatgagaaggagagggaatatgaatctccttggctcatgtaccgagaaaagatcaagtct
tccaaggtctacatacatgacagttcaatggttcccaactacccattactgttctttggc
cggaagttgaactatgttgatggcattatcaatgttgatgacttcgtaagggttcgctgc
tcacgacatgttgcacatttagtacagagtttaagaacgcagctggatgaacttctagaa
tataagattagccatcctggtgttaccagatggaataaatcaagcaaagagggagctctt
ctgcacaccattgtagaccttatctctagtgagaagatttcctcctcacaggacaactat
gactattatgatgatggggatgattag
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