Penaeus chinensis (fleshy prawn): 125045260
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Entry
125045260 CDS
T08118
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB-like
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03022
Basal transcription factors
pchn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125045260
09124 Replication and repair
03420 Nucleotide excision repair
125045260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchn03021
]
125045260
03400 DNA repair and recombination proteins [BR:
pchn03400
]
125045260
Enzymes [BR:
pchn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
125045260
Transcription machinery [BR:
pchn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
125045260
DNA repair and recombination proteins [BR:
pchn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
125045260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
TniB
Motif
Other DBs
NCBI-GeneID:
125045260
NCBI-ProteinID:
XP_047498420
LinkDB
All DBs
Position
37:21780827..21785907
Genome browser
AA seq
790 aa
AA seq
DB search
MPKKHRFHEKGTKRSRRDEGFSDDEESNELEGVPQASKQNVEERGQQTTPKDQYGAFDYR
KEVELRDDHESRPLWVASNGHIFLESFSPVYKHAKDFLITISEPVCRPEHIHEYKLTAYS
LYAAVSVGLQTHDIIEYLKRLCKTSLPPGICEFIQSCTLSYGKVKLVLKKNRYYVESDFP
DVIQKLIKHPVIYDCMLRPNEGVTSSERQKSQSIMFTSHQAQMAGGTDISKPNSNPEEGT
NGEAKEGEAVPEDINDFYDKFEKADEEEEEDKNLKTLSFEVNQDKIETLQKTCIGLDYPL
LAEYDFKNDTVNEDIKIDLKPSAVLRPYQEKSLRKMFGNGRARSGIIVLPCGAGKSLVGV
TACCTVNKKALVLCNSGVSVEQWKQQFKMWSTATDDMICRFTSDAKDKPFNAGILVTTYA
MISHNQKRAYEAEQTMNWLKEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTATLV
REDDKIADLNFLIGPKLYEANWLELQKEGFIARVQCAEVWCPMTPEFYREYLTGKVSDQK
IRLLCAMNPNKFRTCEFLIKYHENRNDKIIVFIDEVFALIHYAKTMGKPYICGKTGQKER
MAIIQNFKLNPKVNTIFFSRVADTSFDIPEANVLVEISSQGGSRRQEAQRLGRILRAKKG
AIAEVYNAFFYALLSQDTREMGYSRKRQSFLINQGYAYQVVTPAQMVGMDEAQLHYNTRE
EKVALLEQILAASESDMYEEGVGGERIIGGSMRRPGNMGSMSGADDQIYGERRKGSKKDH
QHFLFKKYRS
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagaaacacaggttccacgaaaaagggaccaagcgttctcgccgtgatgaaggt
ttctctgatgatgaagaatctaatgaattggagggtgtcccacaagcatccaaacagaat
gttgaggaacgaggacaacaaaccacgccgaaggatcagtatggtgcttttgattaccgc
aaggaggtagagcttcgagatgaccacgagagtcgacctctttgggtagccagcaatggc
catatcttcctggaatctttctcacctgtctacaaacatgcaaaggacttcctgattacc
atttcagagcctgtatgcagaccagaacacattcatgaatacaaattgacagcatactct
ctttatgcagctgtgagtgtgggtcttcaaactcacgacatcatagaatatctgaaaaga
ctttgcaaaacatcacttcctcctggcatttgtgagtttattcagagttgtactctctca
tatggtaaagtcaaacttgtattgaaaaagaatagatattatgtggagagtgatttccca
gatgttatccagaaactcattaaacacccggtcatttatgactgtatgctgagaccaaat
gaaggagtcacaagttctgaacgtcaaaagtcacagtccattatgttcacaagtcatcaa
gcacaaatggcaggtggaacagatatttccaagcccaacagtaatccagaagaaggaacc
aatggtgaagcgaaggaaggagaagcagtccccgaggatatcaatgatttttatgataag
tttgagaaggcagatgaagaagaagaggaggataagaatctaaaaactttatcatttgaa
gtcaaccaagataaaattgagaccctacaaaaaacatgcattgggctggattacccactc
ttggcagaatatgactttaagaatgatactgtcaatgaagatattaaaattgatctcaag
ccttcggctgtcttacgaccatatcaagaaaagagcttgagaaaaatgtttggtaatgga
agagcaagatctggtattattgtgctcccttgtggtgctggtaaaagtttagtgggtgtt
acagcatgttgcacagtgaataaaaaggctttagtactttgtaactcgggagtgtctgtt
gaacagtggaaacaacagttcaagatgtggtcaactgcaactgatgatatgatttgtaga
tttacctctgatgccaaagacaaacctttcaatgcaggtattttggttaccacatatgct
atgatatcccacaaccagaaacgagcctatgaagcagagcagacaatgaattggctcaag
gaacaggaatggggtattatggttttagatgaagtacacactattcctgcaaaaatgttc
agaagagtccttaccatagtccagtctcactgtaagcttggcttaactgccactttggtc
cgagaggatgacaaaatcgctgacctgaatttccttattgggccaaaattgtatgaagcc
aattggcttgagctacagaaggaaggattcattgcaagggtccaatgtgcagaggtatgg
tgtcccatgacaccagagttttatagagagtatttaacaggaaaagtatctgaccagaaa
attaggcttctttgtgctatgaaccccaacaaatttagaacttgtgaatttcttatcaaa
taccatgagaacagaaatgacaagattatagtgtttattgatgaggtttttgcactgatt
cattatgccaaaactatgggaaaaccttatatctgtggtaagacaggtcagaaggaacgt
atggccatcattcagaatttcaaattaaatcccaaagtcaacactatattcttcagtcga
gtggcagatacttcctttgatattcctgaagcaaatgtcttggttgagatctcgtcacag
ggaggatctaggcgacaggaggcccagaggttaggtcgtatcttgagagctaaaaaggga
gccatagcagaagtttacaatgctttcttctatgccttgctttcccaagacacgagggag
atgggatactcacgcaagaggcagagtttcctcatcaatcagggctatgcttatcaggta
gtcactcctgcacagatggtaggaatggatgaggcacagttgcattataacactagagag
gaaaaagtagcattgcttgaacagatccttgctgcctcagaatctgacatgtatgaggaa
ggtgtgggaggggaacgtattatagggggttcaatgcgtcgacctggaaacatgggttcc
atgtcgggtgcggatgaccagatctatggtgaaaggaggaagggctccaagaaggatcac
cagcatttccttttcaagaaatacagatcctag
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