Penaeus chinensis (fleshy prawn): 125046079
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Entry
125046079 CDS
T08118
Name
(RefSeq) pre-mRNA-processing factor 17-like
KO
K12816
pre-mRNA-processing factor 17
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125046079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pchn03041
]
125046079
Spliceosome [BR:
pchn03041
]
Complex C
Other components
Step II factors
125046079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_RIG_2nd
WD40_RFWD3
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_NWD2_C
Beta-prop_NOL10_N
PQQ_2
Motif
Other DBs
NCBI-GeneID:
125046079
NCBI-ProteinID:
XP_047499668
LinkDB
All DBs
Position
38:15271004..15279526
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AA seq
571 aa
AA seq
DB search
MASLLNLKSYGSGSESDSDSVGEESLQHLRPIESGNTISNQLQFVVNPEVTSTKELDDRR
HLDPQEKELKYNPKYEELFAPTLGPNKPESDYHKVNRNTLAGHVEPAHFNHFEFESQRRT
FTTYGYAVDPSISGDPDDGRRYIGDTTTAKESSGITVFETKHKPDQPTKRRRDKNDDAGD
IDGFKGPWAKYENEQTVMKPSEEEQHALDEILAKRQKRGKQTDDKPIEEKSLLHIKDAYD
YQGRSFLHVPQDVGVNLKSPDPPEKCFMPKKLIHTWKGHNKGVSAIKWLPNSGHLMLSCS
MDTKIKIWEVYNNRRCIRTYMGHKQAVRDACFDNDGKQFLSAGYDRFIKLWDTETGDCVS
RFTSRKIPYCVKFHPDEEKQNLFVAGTSDKKIVCWDIRTGEVVQEYDRHLGAVNTITFID
ENRRFVSTSDDKSLRVWEWDIPVDFKYIADPTMHSMPAVTLSPNKKWLACQSMDNKIVIF
SALDRFKMNRKKTFTGHMVAGYACTLDFSPDMSYLVSGDADGKAYVWDWKTTKLYQKWKA
HDDVCIGILWHPHETSKLATAGWDGLIKYWD
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgctgctcaacctgaaaagttatggcagcgggagtgagagtgacagtgacagc
gttggcgaggaatctttacaacatttgcggccgatcgaaagcggcaacactatctctaac
caattacagtttgtggttaatccggaggtgacgtcaacgaaagaactggatgaccgccgc
cacttagacccacaagagaaggagctgaaatacaacccaaagtatgaagaactgtttgct
ccaactctgggtcctaacaagccagagtcagactaccacaaagtgaaccgcaatactctt
gctggacatgttgaacctgcgcacttcaatcattttgaattcgagtctcagagacgcaca
tttacaacttatgggtatgctgttgacccatctatttctggagaccctgatgatggaaga
agatacattggagatacaactacagccaaggaaagttccgggataacagtgtttgagaca
aagcataaacctgatcagccaacaaaacgacgtcgtgacaagaatgatgatgcaggtgac
attgatggctttaaaggaccctgggccaagtacgaaaatgaacagacagtcatgaagccc
tcagaggaggagcagcatgcactagatgagattttggccaaaagacaaaaacgtggaaaa
cagacagatgataaacccattgaagagaagtctcttctccatattaaggatgcttatgat
taccagggacgatctttccttcatgtcccacaagatgttggtgttaacttaaaatctcca
gaccctccagagaagtgtttcatgccaaagaagttgatacacacgtggaaggggcataac
aaaggtgtttcagcaatcaagtggttgccaaattcaggtcacctcatgttgtcatgttct
atggacacaaagattaaaatctgggaggtgtataataaccgacggtgcattaggacttac
atggggcacaaacaggctgtcagagatgcctgttttgataatgatggaaaacagttcctt
tcagctggttatgatcgtttcattaagctttgggacactgaaacaggagattgtgtatca
aggttcaccagtcgcaagataccctattgtgttaaattccatcctgatgaagaaaagcag
aatttatttgttgctggaacttcagataagaaaattgtatgctgggatattagaactggt
gaagtagttcaagaatatgatcgtcatttaggagctgttaacacgataacatttattgat
gaaaacagaagatttgtctccacatcagatgataagagtttgcgtgtgtgggagtgggat
atccctgttgattttaagtacatagcagatcctactatgcattccatgcctgctgtgacc
ctctcaccaaataagaagtggttagcatgtcaaagcatggataacaagattgtgatattc
tctgctctggatagattcaagatgaaccgtaaaaagactttcacagggcacatggtagct
ggatacgcctgcacccttgacttttctccagacatgtcctatcttgtatcaggcgatgct
gatggaaaagcctatgtttgggactggaaaacaacaaagctttaccagaaatggaaggcc
catgacgatgtttgcattggcatcttgtggcacccacatgagaccagtaaacttgctaca
gccggctgggatggccttattaaatattgggactga
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