Penaeus chinensis (fleshy prawn): 125046385
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Entry
125046385 CDS
T08118
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
pchn
Penaeus chinensis (fleshy prawn)
Pathway
pchn04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pchn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125046385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pchn04121
]
125046385
Enzymes [BR:
pchn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125046385
Ubiquitin system [BR:
pchn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125046385
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
125046385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_EIPR1
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
zf-C3HC4_2
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_DCAF4
Beta-prop_WDR35_TULP_N
zf-C3HC4
Beta-prop_HPS5
WD40_like
zf-RING_2
Beta-prop_DCAF12
zf-C3HC4_3
zf-RING_UBOX
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_IFT140_1st
zf-RING_5
zf-C3HC4_4
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_IFT122_2nd
RING_XB3-XBAT31
Beta-prop_IP5PC_F
zf-RING_10
Filament
DUF5803
Motif
Other DBs
NCBI-GeneID:
125046385
NCBI-ProteinID:
XP_047500078
LinkDB
All DBs
Position
39:complement(2763562..2782660)
Genome browser
AA seq
650 aa
AA seq
DB search
MASNETHLDGPSTRMGRGVKRTHPIVLNGLEDTAEEINSDYQCPVCLGLISEAHVTKCGH
TFCHECLVRSIETDKRCPKCNFAIDSVENIFPNHTVNQQIFKQRRAVDLQTAFAKRHKSA
ALSELRNYLSFDSSCLSVSDISDLITILQEKRDQMENASKRNKYELMKDFLSELRKHKEE
QLDTISRELKLITHDLSSVQTNLESVSPYSDSLVSCVPQGNSVPNSSGVLLNEILDADCP
GTSNGSQDSRSPTEEGFNVPLFSQANPQTSTIDAKRKRMHLHFKELVERYFSMRVPGFSD
SGVEEGEGNGLEQFGECISKFTQYSSMRPLATINYNCDMFHQSSNIASSIEFDKDSEFFA
VAGLTRKIRIFDYGTVIRDTVDLHYPCSEMICPSKISCVSWNNYMKHMLASSDYNGTVTV
WDAFTAQRLHVFQEHEKRCWSVDFNRMDTKLVASGSDDHKVKLWSLDSERSLTCLEAKAN
VCCVQFNPASRYHLAFGSADHCVHYYDLRNLKEAVRVFKGHRKAVSYVKFISSEDIVSAS
TDSQLKIWNVNSAHCVRSLQGHTNEKNFVGLATDGEYVACGSENNSLYVYYKGLSKKLFS
LKFDQRKWVLDPEQKEEESTEFVSAVCWRKGSNIIAAGNSKGIIKILQMV
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggcctccaatgagacacatcttgatggccccagcacacgcatggggaggggagtcaag
agaacacatcctattgtgctcaatggtctcgaagatacagctgaagagataaattcagat
tatcagtgtccagtgtgccttggcctcatctcagaggcacacgtaacaaagtgtggccat
actttctgtcatgaatgcttagtgcgcagcatagagactgataaacgctgtcccaagtgc
aattttgctattgatagtgttgaaaacatttttccaaatcacactgtgaaccaacaaatt
tttaaacagcgtcgtgctgtggatctgcaaacagcctttgcaaaaagacacaagtcagcg
gcgcttagtgaactgcggaactacctaagctttgattcctcttgtcttagtgttagtgac
atatctgaccttatcactattctacaggaaaagagagatcagatggaaaatgcatcaaag
cgcaacaagtatgagctcatgaaggacttcttgtctgaactcagaaagcacaaagaggaa
cagttggatacaatcagcagggagttaaaactaataactcatgatttgtcaagtgtacaa
acaaatcttgaaagtgtctcaccttacagtgatagtctagttagttgcgttccccaggga
aatagtgtgccaaattctagtggtgtgttgctgaacgagattctcgatgctgactgccca
ggaacctcaaacggctcccaggattcacgaagccctacagaagaaggattcaatgtaccc
ttattcagccaggcaaaccctcagacctccaccatagatgctaagcggaagcgaatgcat
ctgcattttaaggagttggtggaacgatacttcagcatgcgtgttcctgggttcagtgat
tctggggttgaggaaggggaagggaatggtcttgaacagtttggagaatgcattagtaag
tttacccagtatagtagcatgcgacctctagctacaattaattataactgtgatatgttt
catcagtcaagtaacattgcatctagtatagaatttgataaggacagtgaattttttgca
gtggcgggtttgacaagaaagatccgtatttttgactatggcacagtaataagagataca
gtagacctgcactatccatgctcagagatgatctgtccctcaaagattagctgtgttagc
tggaataattatatgaagcatatgttagctagcagtgattacaatggaacagtcactgtt
tgggatgctttcacggcccagcggttacacgtttttcaagagcatgagaaaaggtgctgg
agtgtagactttaacagaatggacacaaagcttgtggcctctggcagtgatgatcacaag
gtaaaactgtggtcattagacagcgagaggtctttgacatgcctggaagccaaagcaaat
gtatgttgtgtgcagttcaatcctgccagtcgttatcatttggcatttggatctgctgac
cactgtgttcattactatgaccttcgaaacctaaaggaagcagtgagggtgttcaaaggt
catcgtaaagctgtatcatatgtcaagtttatttccagtgaagatattgtttctgcatca
actgacagccagctgaaaatctggaatgtgaacagtgctcactgtgtgagatcccttcag
ggacatacaaatgagaagaattttgtagggttggcaactgatggtgaatatgtggcttgt
ggctcagagaataactccctctatgtttactataagggactgtctaaaaagttgtttagc
ttaaagtttgatcagaggaagtgggttttagatccagagcagaaggaggaggaatccacc
gagtttgtgtctgctgtctgctggaggaaaggatctaacatcatagctgctggcaacagc
aagggtatcataaagattctgcagatggtctag
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