Pseudomonas chlororaphis subsp. piscium: C4K32_0308
Help
Entry
C4K32_0308 CDS
T09060
Name
(GenBank) ATP-dependent DNA helicase RecS (RecQ family)
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pchp
Pseudomonas chlororaphis subsp. piscium
Pathway
pchp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4K32_0308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchp03019
]
C4K32_0308
03400 DNA repair and recombination proteins [BR:
pchp03400
]
C4K32_0308
Enzymes [BR:
pchp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C4K32_0308
Messenger RNA biogenesis [BR:
pchp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C4K32_0308
DNA repair and recombination proteins [BR:
pchp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C4K32_0308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
SNF2-rel_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AZC67001
LinkDB
All DBs
Position
338015..339949
Genome browser
AA seq
644 aa
AA seq
DB search
MHDTLEQVFGYPQFRPGQEAAVSAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVS
PLLALMQDQLAFLQRHGIAAASIDSAQSRDDANEVMARARSGELKILMISVERLKNERFR
NFLQQVRISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQALLLTATATPKVIADM
QAKFSIAEQDVVTTGFYRPNLNLLVEPVRGQDKRRRLVQWMSERPGQPSIVYVTLQKTAE
HIAEHLSRHGIQAQAYHAGLPHEQREAIQRQFMAGQSNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQSSDCLVLANRDSLNVLENFVYGDTPELEGIRCVLDELQ
GAAPDGQWEFLLGPLADQSNIRQLPLKTLLVQLELRGLIAPRYAYFAEYRFKFLEEPEVL
LARFEGERREFVAAIIETSSRARTWATVNFDALYQQHQAERNRVVKALDYFQEKGWVELE
SKQMTEVYNLLETGFDAATLSQQLHAYFKQHESSEIARIHAMLALFATEQCLGHRLAQYF
GDDQAPQRCGHCSVCHGQVARLPEPPALPALVDKNFEALCGDFIHRHQQHSGTVPGAERL
TRFLCGISVPLFTKLKARSIQGFAVLEDYPYAEVRDWAEHHLQG
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacaccctcgaacaggtcttcggttatccacagtttcgtcccggccaggaggcg
gcagtcagcgcggtactggccgggcgctcggcggcggcgatctttcccacgggctccggc
aagtccctgtgctaccagctgccggccttgctgctgccgcacctgaccctggtggtctcg
ccgttgctggcgctgatgcaggaccaactggcattcctgcagcggcacggcatcgccgca
gcgagcatcgattcggcgcagagccgcgacgacgccaacgaggtcatggcgcgggcgcgc
tccggtgagctgaagatcctgatgatctcggtggagcgtctgaagaacgagcgctttcgc
aactttctgcagcaggtgcggatctccctgctggtggtggacgaggcgcactgtatctcc
gaatggggccataactttcgccctgactacctcaagctgccggactaccagcgccagttc
aacattccccaggcactgctgctgaccgctaccgccacgcccaaggtgatcgccgacatg
caggcgaaattctccatcgccgagcaggatgtggtgaccaccggtttctatcggcccaac
ctcaacctgttggtggaaccggtgcgcggccaggacaagcgccggcgcctggtgcagtgg
atgagcgagcgtcccgggcagccgagcatcgtctatgtcaccttgcagaaaaccgcggag
cacatcgccgagcatctgagtcgccacggcatccaggcccaggcctatcacgccggtctg
ccccatgagcagcgcgaggccatccagcgtcagttcatggctggccagtccaattgcatc
gtcgccaccatcgctttcggcatgggcatcgacaagagcgacatccgtaacgtggtgcat
ttcgacctgcccaaatccatcgagaactacagccaggaaatcggccgcgccgggcgtgat
ggacaatcttccgactgcctggtgctggccaaccgcgacagcctcaacgtgctggaaaac
ttcgtctacggcgacacgccggagctggaaggcattcgttgtgtgctggacgagttgcag
ggtgcggcgcccgatgggcagtgggagttcctgttggggccgctggcggaccagagcaac
attcgtcagctgccgctcaagaccttgctggtgcagctggaactgcgtggtctgatcgct
ccgcgttacgcctacttcgctgaataccgcttcaagttcctcgaggagccggaagtgctg
ctggcacgtttcgaaggtgagcgccgagagttcgtggcggcgatcatcgagacctccagc
cgtgcccgaacctgggccacggtgaatttcgacgcgctttatcagcagcatcaggccgag
cgtaaccgagtggtgaaggccttggactacttccaggaaaagggctgggtcgagctggaa
agcaagcagatgaccgaggtctacaacctgctggagacgggcttcgatgccgcgaccctg
agccagcaattgcacgcctatttcaagcagcacgaaagcagcgagatcgcgcggatccac
gcgatgctcgcgctgttcgccaccgagcagtgcctggggcatcgcctggcgcagtatttc
ggcgatgaccaggcaccgcagcggtgcgggcattgctcggtgtgccatggccaggtggcc
cgtctgccggagccgccagccttgcccgcgcttgtggataaaaacttcgaggcgctgtgc
ggtgattttatccacaggcaccaacagcacagcggcacggttccgggggcggaacgactg
acgcgtttcctgtgcgggatcagcgtgccgctgttcaccaagctcaaggcgcggtcgatc
cagggttttgcggtgctcgaggattacccctacgccgaagtgcgcgattgggccgaacat
caccttcagggttga
DBGET
integrated database retrieval system
