Pseudomonas chlororaphis subsp. piscium: C4K32_0567
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Entry
C4K32_0567 CDS
T09060
Name
(GenBank) 3'-to-5' oligoribonuclease (orn)
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
pchp
Pseudomonas chlororaphis subsp. piscium
Pathway
pchp03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pchp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
C4K32_0567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchp03019
]
C4K32_0567
03009 Ribosome biogenesis [BR:
pchp03009
]
C4K32_0567
Messenger RNA biogenesis [BR:
pchp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C4K32_0567
Ribosome biogenesis [BR:
pchp03009
]
Eukaryotic type
Pre-60S particles
RNases
C4K32_0567
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
AZC67258
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All DBs
Position
625268..625810
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AA seq
180 aa
AA seq
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MQNPQNLIWIDLEMTGLNPDTDVIIEMATIVTDSNLNTLAEGPVIAIHQSDEILAGMDEW
NTRQHGGSGLTQRVRESRISMAEAEAQTIAFLEQWVPKGKSPICGNSICQDRRFLYRHMK
ALESYFHYRNLDVSTLKELAARWAPDVRDSFKKGSTHLALDDIRESIAELQHYRKHFIKL
NT seq
543 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacccgcagaatctgatctggatcgatctggaaatgaccggtctgaaccctgat
accgacgtcatcatcgagatggcgaccatcgtcaccgatagcaatctcaataccttggct
gaaggcccggtcatcgccatccaccagagcgacgaaattctcgccggcatggatgagtgg
aacacccgtcagcacggcggctcggggctgacccagcgcgtgcgtgaaagccgcatcagc
atggctgaagccgaagcgcagaccatcgctttcctggaacagtgggtgcccaagggcaag
tcgccgatctgtggcaacagcatctgccaggaccggcgcttcctgtatcgccatatgaag
gcgctggaaagctacttccactaccgcaaccttgacgtttccaccctcaaggaactggct
gcccgctgggcgccggacgtgcgcgacagcttcaagaaaggcagcacccacctggccttg
gacgacatccgcgagtccatcgccgagctgcagcattaccgcaagcacttcatcaagctc
tga
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