Pseudomonas chlororaphis subsp. piscium: C4K32_0798
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Entry
C4K32_0798 CDS
T09060
Name
(GenBank) Exodeoxyribonuclease V gamma chain
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
pchp
Pseudomonas chlororaphis subsp. piscium
Pathway
pchp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pchp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
C4K32_0798
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pchp03400
]
C4K32_0798
Enzymes [BR:
pchp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
C4K32_0798
DNA repair and recombination proteins [BR:
pchp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
C4K32_0798
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
AZC67482
LinkDB
All DBs
Position
858753..862205
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AA seq
1150 aa
AA seq
DB search
MPDAMSLSAGFMVVHGNRLDELRSLVVSWMRRYPLAPLENEIALVQSNGIAQWLKLALAE
DPEEDDMGGCGIAAAIDVQLPGSFMWQLYRMVLGRDEIPPKSLLDKAPLTWRLMRLLPEL
IDQPHFEPLRRFLTHDTDLRKRYQLAERLADLFDQYQVYRADWLEDWAAGRHQLRSARGE
PKALTPANCWQAELWRALLLDVGEEGMAQSRAGVHQRFIERILSLETAPQGLPSRVIVFG
ISSLPAQALEALAGLARFSQVLLCVHNPCRHHWADIVADKDLLRHQYKRQARKAGMPAVL
DPQTLHQHAHPLLAAWGKQGRDYINLLDSYDDPNSYRSAFRDGRIDLFSESQPQTLLNQL
QDDILELRPLEETRQLWPAVDLQQDKSIRFHIAHSAQREVEILHDQLLARFSEDPELRPR
DVIVMVPDIDSYAPHIRAVFGQLERDDRRFIPFTLTDQGQRGRDPLLIAVEHLLKLPDSR
FPVSEILDLLDVPALRARFSVDEADLPTLHRWIEGAGIRWGMNAEQRADLGLPEELEQNS
WCFGLRRMLLGYAVGRSDACEGIEPYDEIGGLDAALIGPLVALLDALETAYQNLTLPASP
PQWGERLQALTQQFFLASTEHDDYLLSQLEDLRETWLETCESVGLHDELPLTVVREAWLA
GLDQGRLSQRFLAGAVNFCTLMPMRAIPFKLVCLLGMNDGDYPRAQPPLDFDLMGSDYRP
GDRSRREDDRYLLLEALLSARDQLYVSWVGRSIRDNSERPASVLIGQLRDHLASGWKLAN
DQDDLLDAMTQEHPLQPFSARYFHEGNGLFSYAREWQLLHQAQAAPQTVELLAPYVQEEP
LSLGQLQDFLRNPVRHFFSQRLKVFFEAADAPLADEEPFVLDALQRYSLSDSLLEAALNS
VDDPDQALQAQAQRLQASGLLPMVGFGESLQRELIEPLPDLLMRYRQLLELWPTPVTSAL
PITLELKDVKLEGWLSGLHQRSDGGLLSVTTIPNSIGSPKTRKWHRLTRPWVNHLVACAS
GYTLTTALVASDDTLLLPPLDRDSALQSLGDLLLAWQAGMCQPLPVAVKTAFAWLGQSDP
GKADAAARKAYEGDGQTSDGERRESPALARQYPDYNALIADETFSGWVDVLYRPLLQAPW
RSAANGESDA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgccggacgccatgtccctcagcgctggttttatggtggttcacggtaaccgcctggac
gaattgcgcagcctggtggtcagctggatgcggcgttatcccttggcgcctctggagaat
gagatcgccctggtgcagagcaacggcattgcccaatggctgaagctggcactggctgag
gatcccgaggaagacgacatgggcggctgcggcatcgccgccgccatcgacgtgcaactc
cccggcagtttcatgtggcagctttatcgcatggtgctgggacgggatgaaattccgcct
aaatccctgctggataaagcgccgctgacctggcgcctgatgcggctcttgcccgagctg
atcgatcagcctcacttcgaaccgctgcgacgcttcctcactcacgacacggatctgcgc
aagcgctatcaattggccgagcgcctggctgacctgttcgaccaatatcaggtctatcgt
gccgactggctggaagactgggccgcaggacggcatcagctgcgcagtgctcgaggcgag
cccaaggccctgacccccgccaactgctggcaggccgaactgtggcgtgcattgttgctt
gatgtgggagaggagggcatggcgcagagtcgcgccggcgttcaccaacggttcatcgaa
cgcatcctcagcctggaaacggcgccccagggattaccctcgcgagtgatcgttttcggg
atttcctctctgccggcacaagcccttgaagccctggccggattggcccgcttcagtcag
gtcctgctgtgtgtgcacaacccttgtcgtcaccattgggcggatatcgtcgccgacaag
gacctgctgcgccatcaatacaaacgtcaggcgcgcaaggcgggaatgcccgcagtgctt
gacccgcagaccctgcatcaacatgcccacccgctgctcgccgcctggggtaaacagggc
cgtgactacatcaacctgctcgacagctacgacgatcccaacagctatcgttcggccttt
cgcgacggccgtatcgatctgttcagcgagagtcagccgcagaccctgctgaaccagctg
caggacgatattctcgaattgcgcccgctggaggagacccgtcagttatggccggcggtc
gatctgcagcaggacaagtcgatccgttttcacattgcccacagtgcccagcgcgaagtg
gagattctccacgaccaactgctagcgcgcttcagtgaggaccccgaattgcgcccgcgg
gatgtgatcgtgatggtccctgacatcgacagttacgcgccgcatattcgcgcggtcttc
ggccagctggagcgtgacgatcggcgtttcattccattcaccctgacggaccagggccag
cgtggccgtgacccactgctgattgccgtggagcatctgctcaagctgccggacagccgt
ttccccgtcagtgaaatcctcgacttgttggacgtccctgcattacgcgcacgtttttct
gtggatgaagccgatctgccgaccttgcatcgctggatcgaaggcgccggcatccgctgg
ggcatgaacgccgaacaacgggccgacctgggactgccagaagaactggagcaaaacagt
tggtgtttcggcctgcgccgcatgttgctgggctacgccgtggggcgctccgatgcctgt
gagggaatcgagccttacgatgaaatcggtggcctggacgcggcactgatcgggccgctg
gtggccttgctcgatgcactggagacggcgtatcagaacctcaccttgccggcttcgccg
ccgcagtggggcgagcgcctgcaagccctcacgcagcagttcttcctggccagtaccgag
catgacgactatctgctgagccaacttgaagacttgcgcgaaacctggctggaaacctgc
gagtcggtcggcctgcacgatgagttgccgctgaccgtggtccgcgaagcctggctggcc
ggcctggaccaggggcgcttgtcccaacgtttcctggctggtgcggtgaatttctgcacg
ctgatgccgatgcgtgcgattccattcaagctggtatgcctgctggggatgaacgacggt
gactacccgcgggcacaaccgccgctggacttcgacctgatgggcagcgactaccggccc
ggcgaccgctcgcggcgcgaggacgaccgttacctgttgctggaggcactgctttcggcg
cgggatcagttgtacgtcagctgggttggtcgcagcattcgcgacaacagcgaacgtccg
gcctcggtgctgattggccagttgcgcgatcacctggccagcggctggaagttggcgaat
gaccaggacgacctgctcgacgccatgacccaggagcacccactgcaacctttcagtgcc
cgctacttccatgaaggcaatgggctattcagctatgcccgggagtggcagctgttgcac
caggctcaagcggctcctcaaacagtcgagcttctggcgccctatgtccaggaagagcct
ttgagcctggggcagttgcaggatttcctgcgtaacccggtgcggcacttcttcagccag
cgtctcaaggtgttcttcgaggcggccgacgcacccttggccgacgaagaaccttttgtg
ctcgacgcgctgcaacgctacagcctgagcgatagtctgttggaagcggcgttgaacagc
gtcgatgacccggaccaggccttgcaagcccaggcgcagcggctgcaggccagcggtttg
ctgcccatggtcggttttggcgagagcctgcaaagagagctgattgagcccttgccggat
ttgctgatgcgctatcggcaattgctggagctatggccaacgccggtcaccagtgccttg
ccaattacccttgaactcaaggacgtgaagctcgaaggctggctgagcggcctgcatcaa
cgcagcgatggcgggctgctgtcggtcactactatccccaacagcatcggctcgcccaag
acccgcaagtggcaccgcttgacccggccctgggtcaatcacctggtggcctgtgccagc
ggctataccttgaccactgcgctggtggccagcgacgacaccttattgctgccacctctg
gaccgcgattcggcgttgcagagtctcggcgacctgctgctggcctggcaggcgggtatg
tgccagccgctgccggtagccgtgaaaaccgcttttgcctggctgggccagagcgacccg
ggcaaggccgacgcggcggcgcgcaaagcttatgagggcgacggccagaccagcgatggc
gagcgtcgggaaagcccggccctggcgcgccagtacccggactacaacgcactgatcgcc
gacgaaaccttcagtggttgggttgatgtcttgtaccgtccactattacaggcgccctgg
cgctccgcggccaatggggagtctgacgcatga
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