Pseudomonas chlororaphis subsp. piscium: C4K32_0799
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Entry
C4K32_0799 CDS
T09060
Name
(GenBank) Exodeoxyribonuclease V beta chain
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pchp
Pseudomonas chlororaphis subsp. piscium
Pathway
pchp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pchp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
C4K32_0799
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pchp03400
]
C4K32_0799
Enzymes [BR:
pchp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
C4K32_0799
DNA repair and recombination proteins [BR:
pchp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
C4K32_0799
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_22
AAA_11
AAA_30
AAA_25
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AZC67483
LinkDB
All DBs
Position
862202..865894
Genome browser
AA seq
1230 aa
AA seq
DB search
MTRQAPLALAFPLRGSQLIEASAGTGKTFTISALYLRLVLGHGGEQAGFDRELLPPQILV
VTFTDAATKELRERIRTRLAEAARFFREETTAPDALIAELRDQFAAEQWPGCASRLDIAA
QWMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRLFCYPMQGD
ALNWVRANWGGPAALLPRVRALFGSEREVDQEQTPAQLIEACLLERRAALVQLKAPWLQW
AAQLREICLQGVASKAVDGRKMQARYFEPWFEKITAWAEDESIEQLDIGTGFSRLTPEGM
AEAWKGDAPDHPALEAMAGLKATLDALPSPDAAVLQHAARWVGARFEEEKRRRAEMGFDD
MLLRLDAALQAEGGERLATLIREQFPVALIDEFQDTDPVQYRIFESIYRIEDNNPETGLF
LIGDPKQAIYAFRGADIYTYLRARQATSGRLHTLGTNFRSSHAMVKAVNHVFERAERREQ
GRGAFLFREKSGENPVPFLSVASQGRKEQLQREGQVVPALNIWHLATEQAISGALYRQQL
AAACASEIVALLNGGQQASAGFARDGQPFKGLLPADIAILVRDGKEAQAVRGELAARGVR
SVYLSDKDSVFAAQEAQDLLAWLKACAEPDIERPLRAALASITLNLPLVELERLNQDELA
WESRVMQFRGYRLIWRTQGVLPMLRRLLHDFQLPQALIARSDGERVLTNLLHLSELLQQA
AAELDGEQALIRHLAEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVFLPFI
CSAKPVDGSRLPLHYHDESGKAQVTLRPTPELIAQADDERLAEDLRLLYVALTRAQHACW
LGVADLKRGNHNSSVLHLSALGYLLGGGALLSESSGLARWLQDLQQGCEAMSVREMPSAT
DSCFHPPRNDATLLAPLAPKRRAAENWWIASYSALRISDSLGAGSTEAPESPQAQKLFDD
ERLDPDAPREVVASGADIHRFPRGPNPGTFLHGLLEWAGDEGFAADPAAIEDAIGRRCNR
RGWEGWIRTLSDWLRHLLQLPLPAGAGRSPVVLAQLTQYRVEMEFWFASHKVDVLKLDEL
VRQYTHQGVPRVTAEPVLLNGMFKGFIDLTFEHEGRYYVADYKSNWLGVDDAAYTEQAME
QSILDNRYDLQYVLYLLALHRQLRARLADYDYDRHMGGALYLFLRGTGSASRGVFFTRPP
RELIERLDRLFQGKPEQPRAEPAWEQGVLL
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgacccggcaagcacctttggccctggcgttcccgctacggggcagccaactgatcgaa
gccagcgccggtactggcaagacctttaccatctcggcgctttacctgcgcctggtgctg
gggcacggcggcgagcaggccgggttcgaccgcgagttgttgccaccgcaaattctggtg
gtgacctttaccgacgcggcaaccaaggaactgcgcgaacggatccgcacccgcctggct
gaagccgcgcgcttcttccgcgaggaaaccaccgcgcctgacgcgctgattgccgagttg
cgcgatcagttcgccgccgagcaatggccgggttgcgccagccgtctggatatcgccgcg
caatggatggatgaggctgcggtctcgaccatccacagttggtgccagcgcatgctgcgc
gagcacgcgttcgacagcggcagcctgtttacccagaccctggaaaccgaccacagcgat
ctgctgggcgaagtgttgcgcgactactggcgcctgttttgctacccgatgcagggcgat
gccctgaactgggtacgggccaactggggcgggcccgcggccttgctgcccagggtgcgg
gcgctgttcggcagcgagcgtgaagtggaccaggagcagacgccagcacagctgatcgaa
gcctgcctgctggagcgccgcgccgccctggtgcagctcaaggcaccctggctgcaatgg
gctgcgcagttgcgggagatctgcttgcagggcgtcgccagcaaggcggtcgatggccgc
aagatgcaggcgcgttacttcgagccctggttcgaaaagatcacggcctgggccgaagac
gaatccatagagcaattggatatcggcaccggcttcagtcgcctgacccccgaaggcatg
gccgaggcctggaagggcgatgcgccggatcatcccgcgctggaggccatggctgggctc
aaggccacgctcgatgccttgccgagccctgacgccgcggtgttgcaacacgccgcgcgc
tgggtcggcgcgcgcttcgaggaggagaagcgtcggcgggccgagatgggcttcgacgac
atgctgttgcgcctcgacgcggcgttgcaggccgagggcggcgagcgtctggcgacgctg
attcgcgagcagtttccggtggccctgatcgacgaattccaggataccgacccggtgcag
taccggatcttcgaaagcatctaccgcatcgaggacaacaaccccgagaccgggctgttc
ctgatcggcgaccccaagcaggcgatctacgccttccgcggcgcggacatttacacctac
ctgcgcgctcgccaggccaccagcggccgtttgcacaccctgggtaccaacttccgttcc
agccacgccatggtcaaggcggtgaaccatgtgttcgagcgtgccgagcgccgtgagcaa
ggacgcggcgcgttcctgttccgggagaaaagcggagagaacccggtgccgttcctgtcg
gtggcatcgcaggggcgcaaagagcagctacagagagaagggcaggtggtaccggcgctg
aatatctggcacctggccacggagcaagccatttccggtgcgctgtaccggcagcaactg
gcggcggcctgcgccagcgaaatcgtcgccttgctcaacggcgggcagcaggccagcgcc
ggtttcgcccgtgacggccagcccttcaaggggttgctgccggcggacatcgccattctg
gtccgtgatggcaaggaggctcaggccgtgcgtggcgagctggccgcacgcggagtgcgc
agcgtgtacctgtcggacaaggactcggtgttcgccgcccaggaagcccaggacctgctg
gcctggctcaaggcctgtgccgaaccggatatcgagcgtccgctgcgtgccgcgctggcc
tccatcaccctgaatctaccgctggttgagctggagcgcctgaaccaggacgagctggcc
tgggagagccgggtcatgcagttccgcggttatcgcctgatctggcgcacccagggtgtg
ctgccgatgctgcggcgcctgctgcatgacttccagttgccccaggccttgatcgctcgc
agcgatggcgaacgggtcctgaccaacctgttgcacctgtccgaactgttgcagcaggcg
gctgccgaactggatggcgaacaagcgctgatccgccatctggccgagcacctggccttg
tccgggcaggctggcgaagaacagatcctgcgcctggaaagcgacgaacagctggtcaag
gtggtgaccatccacaagtccaagggcctggagtatccgctggtgttcctgccgttcatc
tgttcggccaagccggtggatggcagtcgcctgccgctgcactaccacgatgagtcgggc
aaggcccaggtgacgctgcggccgaccccggagctgattgcccaggccgacgacgaacgc
ctggccgaggacctgcgcctgctctacgtggccctgactcgcgcccagcatgcctgctgg
ctgggtgtcgccgacctcaagcgcggcaaccacaacagctcggtgttgcacctctctgcc
ctgggttacctgttgggcggcggtgcgctgttgagcgagtcgagcggtctggctcgctgg
ctgcaagacctgcaacaaggctgcgaggccatgagtgtcagggaaatgcccagcgccacc
gacagctgcttccatccaccgcgcaacgacgccaccctgttggcgcccctggctcccaag
cggcgtgccgcggaaaactggtggatcgcttcctatagcgccctgcgcatcagcgacagc
ctgggggccggtagtaccgaggcgccggaaagcccgcaggcgcagaaactcttcgacgac
gaacgcctcgaccccgatgccccacgtgaagtcgtggccagcggcgcggacatccatcgg
ttcccccgtggaccgaaccccgggactttcctccatggcctgctggaatgggccggtgat
gagggttttgccgccgaccccgctgccatcgaggatgccattggtcgtcgctgcaatcgc
cgcggttgggaaggctggattcgcacattgagcgactggttgcggcacctgttgcaactg
cctttgccagccggagcgggacgatcaccggtggtgctcgcgcaattgacccagtatcgg
gtcgagatggagttctggttcgccagccacaaggtcgatgtgctcaagctcgacgaactg
gtgcgccagtacacccatcaaggcgtgccgcgggtgaccgccgaaccggtactgctcaat
ggcatgttcaagggctttatcgacctgaccttcgagcatgaagggcgttattacgtggcc
gactacaaatccaactggctgggcgtggatgacgccgcctataccgagcaggccatggaa
caatcgattctcgacaaccgttacgacctgcaatacgtgctgtacctgctggccctgcat
cgccagttgcgggcacgcctggcggactacgattacgaccggcacatgggcggcgccctg
tatctattcttgcgcggtacaggctcggccagccgcggcgtgtttttcacccggccaccc
cgtgagctgatcgagcgcctggaccgcctgttccagggcaaacccgagcagcccagggcc
gagccggcgtgggaacagggagtattgctgtga
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