Pseudomonas chlororaphis subsp. piscium: C4K32_0800
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Entry
C4K32_0800 CDS
T09060
Name
(GenBank) Exodeoxyribonuclease V alpha chain
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pchp
Pseudomonas chlororaphis subsp. piscium
Pathway
pchp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pchp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
C4K32_0800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pchp03400
]
C4K32_0800
Enzymes [BR:
pchp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
C4K32_0800
DNA repair and recombination proteins [BR:
pchp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
C4K32_0800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
UvrD_C_2
AAA_11
Helicase_RecD
SH3_13
AAA_22
Viral_helicase1
UvrD-helicase
AAA_17
SLFN-g3_helicase
AAA_16
AAA_28
TraI_hel_assoc_N
AAA_5
T2SSE
NTPase_1
nSTAND3
PhoH
Mg_chelatase
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AZC67484
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All DBs
Position
865891..867966
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AA seq
691 aa
AA seq
DB search
MIEDLLTPLQPQPQSDLAPLVRAADLLLLLDRWVERGWLRALDKAFVGFLHELEPQGDPL
VLMAAALTSHQLGHGHVCLDLFETLKEPDFALSLPPEGDLQSTAAVLPSQVLATLDGAHW
CKALAASRLVALAADQSEQARQRPLVLSGKRLYLRRYWAYERRIDNALRQRLAVQEETPE
DLAERLGGLFGAAKATGPVDWQKLACALATRGAFSIITGGPGTGKTTTVVRLLALLQAPA
VEAGKPLRIRLAAPTGKAAARLTESISLQVRSLSVDDSVREKIPSDVTTVHRLLGNRPGT
RHFRHHAGNRLPLDVLVVDEASMIDLEMMANLLDALPVHARLVLLGDKDQLASVEAGAVL
GDLCRDAEAGWYNPQTRSWLEAVSGEQLADSGLQEDNAGTHPLAQQVVMLRHSRRFGEGS
GIGQLARWVNQQQAEEARRLLAARSHADLYGLSLKGEQDRALERLLLEGHGDGPQGYRHY
LSLLRGQRPPAGTALEDPRWTAWARDVLQAFDQFQLLCAVRKGPWGVEGLNQRITAALFK
ARLIESDQQWYEGRPVLMTRNDYGLGLMNGDIGIALKLPEHEGTQDGRLVLRVAFPRNDG
QGGVRFVLPSRLNDVETVYAMTVHKSQGSEFAHTALILPEALNPVLTKELIYTGITRAKD
WFSLIEPRAGVFEEAVRRKVKRLSGLMLDLG
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgaggacctgctgacgccactgcaaccccagccccagtccgacctggcgcccctg
gtacgggccgccgatctgctgctgttgctcgatcgttgggtcgagcgcggctggctacgc
gccctggacaaggcttttgtaggcttcctgcatgaactggagccgcaaggcgatcctctg
gtgctgatggccgctgcattgaccagccatcaactgggccacggtcatgtctgcctggac
ctgttcgaaaccctcaaggagccggatttcgccctgtccctgccgccggaaggcgatctg
caaagcaccgcggcggtgctgccgtcgcaggtgctggcgacgctggacggggcgcactgg
tgcaaggctctggcggccagtcgcctggtggcgctggcggccgaccagagcgagcaggcc
cgccagcggcccctggtgttgtcgggcaagcgcctgtatctgcgccgctactgggcctat
gagcggcgcatcgacaatgccttgcgccagcgcctggcggtgcaggaggaaacccccgag
gacctggccgagcgcctcggcggcttgttcggcgcggccaaggcgacagggccggtcgac
tggcagaagctcgcctgtgccctggccactcgtggtgccttcagcatcattaccggtggg
cccggtaccggtaaaaccaccactgtggtgcgcctgctggccttgcttcaggcgccggct
gtcgaagccggcaagcctttgcgtatccgcctcgcggcacccaccggcaaggcggcggcg
cgtctgaccgaatccatcagcttgcaagtgcgttccctgtcggtggatgacagcgtgcgt
gagaaaattcccagtgacgtaaccaccgtgcaccggctgttgggcaatcgtccgggtacc
cgacacttccgtcatcacgccggtaaccgcttgccgctggatgtgctggtggttgacgaa
gcctcgatgatcgacctggagatgatggccaatctgctcgacgcgttgccggtgcacgcg
cgcctggtgttgctcggggacaaggatcaactggcctcggtggaagccggcgcggtgctc
ggcgatctgtgccgcgacgccgaggccggctggtacaacccacagacccgcagctggctc
gaggccgtcagcggcgaacagttggcggatagcggtctgcaggaagacaacgccggcact
cacccactggcccagcaggtggtgatgctgcgccactcccggcgcttcggcgaaggcagc
ggcatcggccaactggcgcgctgggtcaaccagcagcaggccgaggaagcgcgtcgtctg
ttggccgctcgcagtcacgccgacctgtatggcttgagcctcaagggcgagcaggaccgc
gccctggagcgcttgctgctggagggccatggtgacgggccgcagggttatcggcattac
ctgagcctgctgcgtggccagcgcccgcccgccggtacggcgctggaagatccgcgctgg
accgcctgggcccgcgatgtactgcaggctttcgaccagttccagttgctctgcgcggtg
cgcaagggaccttggggtgtcgaggggttgaaccagcggatcaccgccgccctgttcaag
gcgcggctgattgaaagcgatcagcagtggtacgaaggtcgtccggtgctgatgacccgc
aacgattacggcctgggcttgatgaacggcgatatcggcattgccctgaaactgcctgag
cacgaaggcacgcaggacgggcgcctggtgctgcgggtggccttcccgcgcaacgacggc
cagggtggtgtgcgtttcgtgttgccgagccggctcaacgatgtggaaaccgtgtacgcc
atgaccgtgcacaaatcccagggctcggaattcgcccacaccgcgctgatcctgcccgaa
gcgctgaacccggtgctgaccaaggagctgatctacaccggcatcacccgagccaaggac
tggttcagcctgatcgagccgcgggctggggtgttcgaagaggcggtgcggcgcaaggtc
aagcgtctgagcgggttgatgctcgacctgggttga
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