Pseudomonas chlororaphis subsp. piscium: C4K32_0895
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Entry
C4K32_0895 CDS
T09060
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pchp
Pseudomonas chlororaphis subsp. piscium
Pathway
pchp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4K32_0895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchp03019
]
C4K32_0895
03016 Transfer RNA biogenesis [BR:
pchp03016
]
C4K32_0895
Enzymes [BR:
pchp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
C4K32_0895
Messenger RNA biogenesis [BR:
pchp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C4K32_0895
Transfer RNA biogenesis [BR:
pchp03016
]
Prokaryotic type
tRNA degradation factors
C4K32_0895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
S1_2
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
AZC67577
LinkDB
All DBs
Position
967026..969131
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV
AGTEEAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIQAVKELAAEAAKPTWDWAPAPEA
TDLLGAIRSEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQPSASDVKAAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD
LFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaaaaaattccagttcggtcagtcgaccgttaccctcgagactggc
cgtatcgcccgtcaggcctccggcgcagtattggtcaccgttgacgacgacgtcagcgta
ttggtgaccgtggttggcgccaagcaagccgatccaggcaagggtttcttccctctgtct
gttcactaccaggaaaagacttacgctgccggtaagatccctggcggtttcttcaagcgt
gaaggccgtccttccgagaaagaaaccctgacctcgcgtctgatcgaccgtccgatccgc
cctctgttcccagaaggcttcatgaacgaagtgcaggttgtctgcaccgtggtttccacc
agcaagaagaccgatccggacatcgctgcgatgatcggtacctcggctgccctggcgatc
tccggcattcctttcgacggtccgatcggtgctgcccgcgttgctttccacgaaagcacc
ggctacctgctgaacccgacttacgagcaactggccgcttcgagcctggacatggtcgta
gccggtaccgaagaagcggtactgatggttgaatcggaagccaaagagctgaccgaagac
cagatgctgggcgccgtactgttcgcccacgacgaattccaggccgttatccaggccgtc
aaagagctggctgccgaagccgccaagccaacctgggactgggctccggctccagaagct
actgacctgctgggcgctatccgctccgagttcggcgaagcgatctcccaggcctacacc
atcaccgtcaaggccgaccgttatgctcgcctgggcgagctgaaagaccaggtcgtcgcc
aagctgtccggcgaagaaggccagccttccgccagcgatgtcaaagccgctttcggtgaa
atcgaataccgcaccgttcgcgaaaacatcgtcaacggcaagccacgtatcgacggtcgc
gacacccgcaccgtgcgtccgctgaacatcgaagtcggcgttctgccgaagacccacggt
tcggccctgttcacccgtggcgagactcaggccctggtagtcgcgaccctgggtaccgcc
cgtgacgcacagctgctggacaccctggaaggcgagaaaaaagaccccttcatgctgcac
tacaacttccctccgttctcggtgggcgagtgtggccgcatgggcggcgctggtcgtcgt
gaaatcggtcacggccgtctggcccgtcgttcggtccaggccatgctgcctgccgccgac
ctgttcccctacaccatccgcgtcgtatcggaaatcaccgagtccaacggttccagctcc
atggcttccgtttgcggtgcttccctggcgctgatggacgctggcgtgccgatgaaggca
ccggttgccggtatcgccatgggcctggtcaaggaaggcgagaaattcgccgttctgacc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaggtagccggtaccgcc
aaaggcgtgaccgcgctgcagatggacatcaagatcaaaggcatcaccgaagaaatcatg
gagatcgccctgggccaggccctggaagctcgcctgaacatcctcggccagatgaaccag
atcattggccagtcgcgtaccgaactgtcggccaacgctccgaccatgatcgcgatgaag
atcgacaccgacaaaatccgtgatgtcatcggtaaaggcggcgcgaccatccgtgcgatc
tgcgaagagaccaaggcttcgatcgacatcgaagacgacggctcgatcaagatcttcggc
gaaaccaaggaagccgcagaagccgcgcgtcagcgcgttctgggcatcaccgcggaagcc
gagatcggcaagatctacgttggtaaggttgagcgcatcgtcgacttcggcgcattcgtc
aacatcctgcctggcaaggacggtctggttcacatctccatgctgagcgatgctcgcgtc
gagaaagtgaccgacatcctgaaagaaggtcaggaagtggaagtgctggtgctggacgtg
gacaaccgcggccgtatcaagctgtccatcaaagacgtagcagcagccaaggcttcgggc
gtttaa
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