Pseudomonas chlororaphis subsp. piscium: C4K32_1261
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Entry
C4K32_1261 CDS
T09060
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pchp
Pseudomonas chlororaphis subsp. piscium
Pathway
pchp03030
DNA replication
pchp03430
Mismatch repair
pchp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pchp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C4K32_1261
03430 Mismatch repair
C4K32_1261
03440 Homologous recombination
C4K32_1261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pchp03032
]
C4K32_1261
03400 DNA repair and recombination proteins [BR:
pchp03400
]
C4K32_1261
Enzymes [BR:
pchp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C4K32_1261
DNA replication proteins [BR:
pchp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
C4K32_1261
DNA repair and recombination proteins [BR:
pchp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
C4K32_1261
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
HHH_3
HROB
Motif
Other DBs
NCBI-ProteinID:
AZC67942
LinkDB
All DBs
Position
1368887..1372411
Genome browser
AA seq
1174 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRIKPLVKTLAGMGMPAVAVTDQNNMCSLVKFYKASMGTG
IKPICGADLWLSNKDPENPLSRISLLVMNAVGYRNLTELISRGFIDGQRNGQIIIEREWV
AEAAEGLIMLSAAKEGEIGIALLSGDLQEAETLAREWMAVFPDRFYLEVQRTNRPNDEEQ
LHAAVALADKIGAPLVATNDVRFIKREDFEAHETRVCIGEGRALDDPRRSKNYSDQQYLK
SAEEMAELFSDLPEALENTVEIAKRCNIEVKLGKHFLPDYPIPDGMTIDEYFRKVSFDGL
DERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKSNGVPV
GPGRGSGAGSLVAYVQKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYV
AEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAGDGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETINREQVKKNLPDVNIDFIPLDDKKTYE
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHPDYQYDGLRPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCANNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHH
PAPFMAAVLSADMHNTDKVVVLIEEVRSMKLRLDAPDVNSSDFKFTVNNDGRIVYGLGAI
KGVGEGPVEAIVEARAEGGPFKDLFDFCSRVDLKRINKRTLDALIRSGALDRLGPHFHDE
IKAYQANIDRNRAVLLSALEEAVKAAEQTARTADSGHADLFGGVFVEEDADVYANHRKAK
ELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIVDLKPARDTQTVAGMIIALRV
MKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRL
RVKRVMSMEDARTNLAESLRLKVHTEALKGDQLRWLGELCKRHRGACPISMEYTKEDAKA
LLQFGEAWRIDPADALIQALRDQFGRDNVFLQYR
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcatctacgcctgcacactgaatattccctggttgacggtctg
gtgcggatcaaaccgctggtcaagacgttggccggcatgggcatgcccgcggtggcggtt
accgaccagaacaacatgtgttccctggtcaagttctacaaggcatccatgggcaccggg
atcaagccgatctgcggcgccgacctgtggctgtcgaacaaggaccccgagaatccactg
agccgcatcagcctgctggtgatgaacgccgttggctatcgcaacctgaccgagctgatt
tcccgcggcttcatcgatggccagcgcaatggccagatcatcatcgagcgcgagtgggtg
gccgaggccgccgaaggcctgatcatgctctcggccgcgaaagagggcgagattggtatc
gccttgctctctggcgacctgcaagaagcagaaaccctggcccgcgaatggatggcggtg
ttcccggaccgcttctatctggaagtgcagcgtaccaaccgtcccaacgacgaagagcag
ttgcacgcagccgtggccctggcggacaagatcggcgcgccgctggtggcgaccaacgat
gtgcgcttcatcaagcgcgaagacttcgaggcccatgaaactcgggtctgcatcggtgaa
ggccgcgccctcgacgacccgcgccgctcgaagaactacagcgatcagcagtacctgaaa
agcgccgaggaaatggccgagctgttcagcgacctgcccgaggccctggaaaacacggtc
gagatcgccaagcgttgcaatatcgaagtgaagctgggcaagcacttcttgcctgactat
ccgattcccgatggcatgaccatcgatgaatatttccgcaaggtttccttcgacgggctg
gacgagcgcctcagcgtgctgctgcccaaggacaccaccgaagactatgaagccaagcgc
caggtgtatgtcgaccggctgaatttcgagctggatatcatcatccagatggggttcccc
ggttacttcctgatcgttatggactttatccagtgggccaagagcaacggtgtgccggtg
gggccaggccggggctcgggtgccggctccctggtggcctacgtgcagaagatcaccgac
ctcgacccgctggcttacgacctgctgttcgaacgtttcctcaacccggaacgggtttcc
atgcccgacttcgacgtcgacttctgcatggacggtcgtgaccgggttatcgactacgtg
gccgagaaatatggccgtaacgcggtaagccagatcatcaccttcggttccatggccgcg
aaggctgtggtgcgggacgtggcgcgggttcagggcaagtcttacggcctggctgaccgt
ctgtcgaagatgatccccttcgaagtcggcatgaccctggaaaaagcctacgagcaggaa
gaaatcctgcgcgacttcatcaaggtcgatgaagaagcggcggaaatctgggagatggcg
cgcaagctcgaaggcgtggtgcgtaacgtcggcaagcacgccggtggcgtggttatcgcc
ccgaccaagctgaccgacttctcgccgatctattgcgacgaagccggcgacggcctggtg
acccaattcgacaaggacgacgtcgaggccgccggcctggtgaagttcgacttcctcggc
ctgcggaccctgaccatcatcaagtgggcgatggagaccatcaaccgcgagcaggtgaaa
aagaacctgcccgacgtcaacatcgacttcatcccgctggacgacaagaagacctacgag
ctgctgcagaaggccgagaccactgcagtgttccagctcgaatcccgaggcatgaaggag
ctgatcaagaagctcaagcccgactgcctggaagacctgatcgcactggtagcgttgttc
cgtcccggtccgttgcaatcgggcatggtggacgacttcatcaaccgtaagcacggtcgc
gccgaactggcctatccgcatccggactaccagtacgatggcttgcggccggtactggcg
ccgacctacggcatcatcctgtatcaggaacaggtgatgcagattgcccaggtgatggct
ggctatacccttggcggggccgacatgctgcgtcgtgccatgggtaagaagaaacccgag
gagatggccaagcagcgcggcggcttcatcgaaggttgcgccaacaacggtatcgatgct
gacctcgcgggcaacatcttcgacctggtggaaaaattcgccggctacggcttcaacaaa
tcccactcggccgcctacgggctggtgtcctaccagactgcatggctcaagacgcatcac
ccggcgcctttcatggcggcggtactgtccgcggatatgcacaacaccgacaaggtggtg
gtgctgatcgaagaagtgcgcagcatgaagctgcgcctcgatgcgccggatgtgaacagt
tccgacttcaagttcaccgtcaacaacgacggccgcatcgtctatggcctgggagcgatc
aagggcgtgggcgaggggccggtggaggcgatcgtcgaggcccgtgccgaaggtggtccg
ttcaaggacctgttcgacttctgcagccgggtcgacctcaagcgcatcaacaagcgtacc
ctcgatgcgttgatccgcagtggtgccctggaccgcctggggccgcacttccacgatgaa
atcaaagcctaccaagccaatatcgaccgcaaccgcgcggtgctgttgtcggccctggag
gaagcggtcaaggcggccgagcagaccgcgcgaaccgccgacagtggccacgccgacctg
ttcggcggggtcttcgtcgaagaggacgcggatgtctacgccaatcatcgcaaggccaag
gaactgaccctcaaggaacgcctgaaaggggaaaaagataccctcggcctgtacctgacc
gggcacccgattgacgaatacgaaggtgagatccggcgtttcgctcgccagcgcatcgtc
gacctgaagccggcgcgcgatacccagaccgtcgccggcatgatcattgccctgcgtgtc
atgaagaacaaaaagggcgacaagatggggttcatcacccttgacgatcgttccgggcgg
atcgaggcttcgctgtttgccgatgccttccattcggcccagtccctgctgcagaccgac
gcaatggtggtggtcgagggcgaggtcagcaacgacgacttctccggcggcctgcgcctg
cgggtcaagcgggtgatgagcatggaagatgcccgcaccaatctggcggaaagcctgcgc
ttgaaggtgcacaccgaagccctcaagggcgatcagctacgctggctgggggagctgtgc
aaacgccatcgcggcgcttgcccgatctccatggagtacaccaaggaggacgccaaggcc
ttgctgcagttcggcgaagcctggcggatcgatccggcggatgccttgattcaagccctg
cgtgaccagttcgggcgagacaacgtcttcctccaataccgttga
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integrated database retrieval system
