Pseudomonas chlororaphis subsp. piscium: C4K32_1402
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Entry
C4K32_1402 CDS
T09060
Name
(GenBank) RNA polymerase associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pchp
Pseudomonas chlororaphis subsp. piscium
Brite
KEGG Orthology (KO) [BR:
pchp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchp03021
]
C4K32_1402
Transcription machinery [BR:
pchp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
C4K32_1402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AZC68081
LinkDB
All DBs
Position
complement(1504080..1506926)
Genome browser
AA seq
948 aa
AA seq
DB search
MAQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGDTRQYALRNAPLTRVRFSPG
DTITHFEGWKMTVREVDDVDGLLVYHGLNGQNEVVTLPETQLSNFIQFRLASDRLFAGQI
DPLAWFSLRYHTLEHTSRQLQSSLWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVG
LGKTIEAGLVIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLQVALFDEERFIESDA
ANPFEDTQLALVALEWLVDDEKAQDALFAAGWDLMVVDEAHHLVWHEDQVSPEYALVEQL
AEVIPGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLAAFRAESENYRPVAEAVQELLDK
GRLSPEAHKTIHGFLGNEGEALLAAVNEGDSEASARLVRELLDRHGTGRVLFRNTRAAVQ
GFPERKLHPYPLPCPDEYLELPLGEHAELYPEVSFQAQPDASEEERWWKFDPRVEWLIDQ
LKMLKRTKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILERDRAAAYFADEEFGA
QVLICSEIGSEGRNFQFAHHLVLFDLPSHPDLLEQRIGRLDRIGQKHVIELHVPYLETSP
QERLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLEEADDGEWQALIDEARTERERLE
DELHTGRDRLLELNSGGAGEGDALVEAILEQDDQFTLPIYMETLFDAFGIDSEDHSDNAL
ILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHPMVQGGMDLVLSGSMGN
TAVALIKNKALKPGTVLLELLYVSEVVAPRSLQLGRYLPPAALRCLLDANGNDLSARVAF
ETLNDQLESVPRASANKFIQAQRDQLTPKINAGEAKIAPRHAERVAEAQRRLAADTDEEL
ARLTALQAVNPTVRDSELVALRQQREQGLAMLEKAALRLEAIRVLVAG
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcagtatcaaccggggcaacgctggattagtgacagcgaagccgagctaggt
ctaggcaccgttctggcacaggacggccgcttgctgaccgtgctctatccggccactggc
gacactcgccagtatgcgctacggaatgcgcccctcactcgcgtgaggttttccccgggt
gacaccatcacccacttcgaaggctggaaaatgaccgtgcgcgaagtcgacgacgtcgac
ggcctgctggtctaccacggcctcaacgggcagaacgaagtcgtcaccctgccggaaacc
caactctcgaacttcatccagttccgtctggccagcgaccgtctgttcgccgggcagatc
gacccgctggcctggttctccctgcgttaccacactctggaacacaccagccgccagctg
caatcgtcgctgtggggcctgggtggcgtacgcgcccagcctatcgcccaccagttgcac
attgcccgtgaagtcgccgaccgtatcgcgccgcgggttctcctggcggacgaagtgggc
ctgggcaagaccatcgaagccggcctggtgatccatcgccagctgctgtcgggccgcgcc
agccgcgtgctgatcctggtcccggagaacctgcagcaccagtggctggtggaaatgcgc
cggcgcttcaacctgcaggtcgcgctgttcgacgaagaacgttttatcgaaagcgatgcc
gccaaccccttcgaggacacccagctcgccctggtggccctggaatggctggtggacgac
gagaaggcccaggacgcgctgttcgccgccggctgggacctgatggtggtcgacgaagcc
caccacctggtgtggcacgaagaccaggtcagcccggaatacgcgctggtggaacagctg
gccgaggtgatcccgggtgtcctgctgctcaccgccaccccggaacagctgggccaggac
agccacttcgcccgcctgcgcctgctcgacccgaaccgtttccacgacctggccgccttc
cgcgccgagagcgaaaactatcgcccggtggccgaagccgtgcaggagctgctggataaa
ggtcgcctgtcgccagaagcgcacaagaccatccacggtttcctcggcaacgaaggcgaa
gccctgctcgccgccgtcaacgagggcgacagcgaggccagcgcgcgcctggtgcgcgag
ctgctggaccgccacggcaccggccgcgtgctgttccgcaacacccgtgccgcggtgcaa
ggcttccccgagcgcaagctgcacccatacccgctgccatgcccggacgaatacctggaa
ctgccgctgggcgaacacgccgagctgtacccggaagtcagcttccaggcccagccggac
gccagcgaagaagagcgctggtggaaattcgacccgcgcgtcgagtggctgatcgaccag
ctgaaaatgctcaagcgcaccaaggtcctggtgatctgcgcccacgcggaaaccgccatg
gacctggaagacgccctgcgcgtgcgttccggcatcccggccacggtgttccacgagggc
atgaacatcctcgagcgcgaccgcgccgccgcctacttcgccgacgaagaattcggcgcc
caggtgctgatctgctcggaaatcggcagtgaaggtcgcaacttccagttcgcccaccac
ctggtgctgttcgatctgccatcgcacccggacctgctggagcagcggatcggccgtctc
gaccggatcggccagaaacacgtgatcgaactgcatgtgccgtacctggaaaccagcccg
caagagcgcctgttccagtggtaccacgaagcgctgaacgccttcctcaacacctgcccg
accggcaacgccctgcagcatcagttcggcccacgcctgctgccgctgctggaagaagcc
gacgatggcgagtggcaagcgctgatcgacgaggcgcgcaccgagcgcgagcgtctggaa
gacgagctgcacaccggtcgcgaccgcttgctggaactcaactccggtggcgcaggtgaa
ggcgatgcgctggtggaagcgatcctcgagcaggacgatcagttcaccctgccgatctac
atggaaaccctgttcgacgccttcggcatcgacagcgaagaccattcggacaatgcgctg
atcctcaagccgagcgaaaaaatgctcgacgccagcttcccgctgggcgacgacgaaggc
gtgaccatcacctacgaccgtaaccaggcgctgtctcgtgaagacatgcagttcatcacc
tgggaacacccgatggtgcaaggcggcatggacctggtgctgtccggctccatgggcaac
accgccgtggcgctgatcaagaacaaggcgctgaaacccggcaccgtgttgctggaactg
ctgtacgtcagcgaggtggtagcaccgcgttcgctgcagttgggccgctacctgccaccg
gccgccctgcgttgcctgctggacgccaacggcaacgacctgtcggcacgcgtcgccttc
gagaccctcaacgaccagctggaaagcgtgccacgggccagcgccaacaagttcatccag
gcccagcgcgaccagctgacgccgaagatcaacgccggcgaagcgaagatcgccccgcgt
cacgccgagcgcgtggccgaggcgcaacgtcgcctggccgccgacaccgacgaagaactg
gcgcgcctgaccgcattgcaagcggtcaacccgaccgtacgcgacagcgagctggtggcc
ctgcgtcaacaacgcgaacaaggcctggccatgcttgagaaagcggcgctgcgcctggaa
gcgatccgggtcttggtagcgggctga
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