Pseudomonas chlororaphis subsp. piscium: C4K32_1616
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Entry
C4K32_1616 CDS
T09060
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pchp
Pseudomonas chlororaphis subsp. piscium
Brite
KEGG Orthology (KO) [BR:
pchp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pchp03009
]
C4K32_1616
Enzymes [BR:
pchp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C4K32_1616
Ribosome biogenesis [BR:
pchp03009
]
Prokaryotic type
rRNA helicases
C4K32_1616
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
Abhydrolase_1
Motif
Other DBs
NCBI-ProteinID:
AZC68293
LinkDB
All DBs
Position
1731312..1732649
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AA seq
445 aa
AA seq
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MFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPILN
RLIGPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKAGLITGGEDFKVQAAMLRK
VPDILIGTPGRLIEQLNAGNLDLKEVEVLVLDEADRMLDMGFADDVQRLVDECPNRQQTM
LFSATTGGSGLREMVAKVLNNPEHLQLNAVSQLNDTTRQQIITADHNQHKEQIVNWLLAN
ETYQKAIVFTNTRAMADRIYGRLVAQEYKAFVLHGEKDQKDRKLAIDRLKQGGVKILVAT
DVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDWNLMSSIER
YLKQNFERRTIKEVKGTYGGPKKVKASGKAAGVKKKKTDAKGDKKKAAAKAPTKRKTANR
PKSDALVSQDGMAPLKRRKPAPAAE
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
gtgttttcccaattcgccctgcacgaacgcctgctcaaagccgtggccgagcttaaattt
gtcgagccaacgcctgtgcaggcagcggccattccgctcgcgctccaagggcgtgacctg
cgggtgacggcgcagaccggcagcggcaagaccgccgctttcgtcctgccgatcctcaat
cgcctgatcggcccggcgaagatccgcgtcagcatcaagaccctgattctgctgccgacc
cgcgaactggcgcagcagaccctgaaggaagtcgaacgcttctcgcagttcaccttcatc
aaggccggcctgatcaccggcggcgaagacttcaaggtccaggccgccatgctgcgcaag
gtgccggacatcctgatcggcaccccgggtcgcctgatcgagcagctgaacgccggcaac
ctcgatttgaaagaagtggaagtgctggtcctcgacgaagccgaccgcatgctcgacatg
ggctttgccgacgacgtgcagcgcctggtggacgagtgcccgaaccgtcagcagaccatg
ctgttctccgccaccaccggtggctcgggcctgcgcgagatggtcgccaaggtcctgaac
aaccctgagcacctgcagctcaacgcggtcagccagctgaacgacaccacccgtcagcag
atcatcaccgccgaccacaaccagcacaaagagcagatcgtcaactggctgctggccaac
gagacctaccagaaggccatcgtcttcaccaacacccgcgccatggccgaccgtatctac
ggccgcctggtggcccaggagtacaaggcgttcgtcctgcacggtgagaaagaccagaag
gaccgcaagctggccatcgaccgcctgaagcagggtggggtgaaaatcctcgtcgccacc
gacgtcgccgcccgcggcctggacgtcgacggcctggacctggtgatcaacttcgacatg
ccacgcagcggcgacgaatacgtgcaccgcatcggccgtaccggccgtgccggcaacgac
ggcctggccatctcgctgatctgccacggcgactggaacctgatgtcgagcatcgagcgt
tacctcaagcagaacttcgagcgccgcaccatcaaggaagtcaaaggcacctacggcggg
ccgaagaaggtcaaggcctccggcaaggccgcgggcgtgaagaagaaaaagaccgacgcc
aagggcgacaagaaaaaagccgcggccaaggccccgaccaaacgcaagaccgccaaccgg
ccgaaaagcgatgccctggtcagccaggacggcatggcgccgctcaagcgccgcaagcca
gcaccagctgccgaataa
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