Pseudomonas chlororaphis subsp. piscium: C4K32_1647
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Entry
C4K32_1647 CDS
T09060
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pchp
Pseudomonas chlororaphis subsp. piscium
Pathway
pchp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4K32_1647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchp03019
]
C4K32_1647
03400 DNA repair and recombination proteins [BR:
pchp03400
]
C4K32_1647
Enzymes [BR:
pchp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C4K32_1647
Messenger RNA biogenesis [BR:
pchp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C4K32_1647
DNA repair and recombination proteins [BR:
pchp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C4K32_1647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HTH_40
ResIII
HTH_23
Sigma70_r4_2
GerE
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
AZC68324
LinkDB
All DBs
Position
1770438..1772564
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AA seq
708 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLRDGLA
VVVSPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIRRGEVKMLYLAPERLVQ
PRMLAFLQNLDIALFAIDEAHCVSQWGHDFRPEYLQLGQLAEMFPQVPRIALTATADKRT
REEIVNRLHLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLSERRSDAGIVYCLSRKK
VDEVAAFLCEQGFPALPYHAGLPSELRAYHQKRFLNEEGLIMVATIAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQDVLMLKQMLQNSEGDERHKRLEQHK
LDAMLALCEETRCRRQTLLAYFDEDMPQPCGHCDNCVDGVQTWDATEPARQALSAIYRTG
QRYGVGHLVDVLLGKDTEKVRSFGHQHLSVFGVGKARSEGEWRSLFRQLVARGLADIDLE
GYGGLRLSDSCRPLLKGEVTLELRRDIKPQTAAKSSTSQASQLVRGEEREQWEALRALRR
KLAEEHGVPPYVIFPDSTLLEMLRSQPGSLAEMARVSGVGARKLERYGEAFLEVLGGQAE
VPKVVADIRHELITLARAGMTPLQIAGQLQCSEKNVYTMLAEAVGKQQLSLEQALDLPED
LLGEIQDAFLDGEGELPPVSEVAELFAGRVPEGVLYCVRAALESEFEM
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcaacgcgtcctcaaggacatcttcggctacgacagtttccgtggc
cgccaaggtgcgatcattgagcgcgtggccagtggcggcgacgccctggtgctgatgcct
accggcggcggcaagtcgttgtgcttccaggttccggccctgctgcgcgacggcctggcg
gtggtggtctcgccgctgatcgcgctgatggacgatcaggtcgcgaccctggaggaactc
ggggtcgccgcggcggcgctgaactccaccctgagcgccgaacagcagcgcgacctggcc
gcgcgcatccggcggggcgaagtgaagatgctgtacctggcgccggagcgcctggtgcag
ccgcggatgctggcgttcctgcagaacctcgacatcgccctgttcgccatcgacgaggcg
cattgcgtgtcccagtgggggcatgacttccgtccggaatacctgcagctgggccaactg
gcggaaatgttcccccaggtgccgcgcatcgccctgaccgccaccgccgacaagcggacc
cgcgaggaaatcgtcaatcgcctgcacctgcagaacgccgagcgtttcctctccagtttc
gaccgtccgaacatcttctatcgcatcgttcccaaggagcagccgcgcaagcaactgttg
gcgttcctcagcgaacggcgcagcgatgccggtattgtctattgcctgtcgcgcaagaag
gtcgacgaggttgccgcattcctctgcgagcagggcttcccggcgctgccctatcacgcc
gggttgcccagcgagctgcgcgcctatcaccagaagcgtttcctcaacgaggaagggctg
atcatggtcgcgaccatcgccttcggcatgggcatcgacaagcccaacgtgcgtttcgtg
gcgcacctggacctgcccaaatccctcgaggcctattaccaggaaaccgggcgtgccggg
cgtgatggcctgcccgccgatgcctggatggcctacggcctgcaggacgtgctgatgctc
aagcagatgctgcagaattccgagggcgacgagcgtcacaagcgcctggagcagcacaag
ctcgacgccatgctggcgttgtgcgaggaaacccgctgccggcgccagaccctgctggcc
tatttcgacgaagacatgccgcagccgtgcggtcattgcgacaactgcgtcgatggcgtg
cagacctgggatgccaccgagccggcgcgccaggcgctgtcagcgatctaccgcaccggc
cagcgttatggcgtcggccacctggtggatgtgctgctgggcaaggacacggaaaaagtc
cgcagcttcggccatcagcatctttccgtattcggcgtgggcaaggcccgtagcgaaggc
gaatggcgctcgctgttccgccaactggtggctcgcggcctggccgacatcgatctggag
ggttatggcggcctgcgtctgagcgacagctgtcggccgttgctcaagggcgaggtgacc
ctggagctgcgccgtgacataaagccgcagactgccgccaagagcagcaccagccaggcc
agccaactggtacgtggcgaagagcgcgaacagtgggaagccttgcgcgccctgcggcgc
aaactggcggaagaacatggcgtgccgccctatgtcattttccccgactccaccctgctg
gaaatgctccgcagccagcccggctccctggcggaaatggcccgggtcagcggcgtcggc
gcacgcaagctggagcgttacggcgaggcgttcctcgaagtgttgggcggtcaggcagag
gtgccgaaagtggtggccgacatccgccacgagctgattaccctggcccgcgcgggcatg
acgccgctacagatcgccgggcaattgcagtgctcggaaaagaatgtttacacaatgctc
gccgaagccgtgggcaagcagcagctgtccctggaacaggcgctggacctgccggaagac
ctgctcggcgagatccaggacgcctttctcgacggcgaaggcgagctgcccccggtgagc
gaagtggccgagttgttcgccggccgcgtgccggaaggtgtgctgtattgcgtgcgtgcg
gcactggagtcggaattcgagatgtga
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