Pseudomonas chlororaphis subsp. piscium: C4K32_1872
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Entry
C4K32_1872 CDS
T09060
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pchp
Pseudomonas chlororaphis subsp. piscium
Pathway
pchp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4K32_1872
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchp03019
]
C4K32_1872
03009 Ribosome biogenesis [BR:
pchp03009
]
C4K32_1872
Enzymes [BR:
pchp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C4K32_1872
Messenger RNA biogenesis [BR:
pchp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C4K32_1872
Ribosome biogenesis [BR:
pchp03009
]
Prokaryotic type
rRNA processing factors
C4K32_1872
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AZC68545
LinkDB
All DBs
Position
complement(2006158..2009379)
Genome browser
AA seq
1073 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEASINQSSYEIAAAAAEAEEVQPAAATRTLVRQEAAVKTAPARANAPVPT
EVAAAPVAAPAAIAEPSLFKGLVKSLVSLFATKEEPAAPVVVEKPATERPARNEERRNGR
QQSRNRNGRRDEERKPREERAPREERTPREAREERQPREVREAREEVQATAREERAPRPP
REERQPRPPREDRKPRGEREERVRELREPLDAAPAATAEERPARQPREERQPRPPREERQ
PRAEQAAAVAEEELLPNEEQLQEDGQENAEGDRPRRRSRGQRRRSNRRERQRDANGNVIE
GSEENSEEPSSADLAAGLAVTAAVASTVISAPAEAQAHEQAERATAANQEAAPTVEAPVV
EATTTVEIPAAPAVEVAQVHEEQREEQAAEPAVVAEQPAVVTEPVVEAPVAEAPAAEPAQ
EAPRAFERAAEAIVAEAPAPVAEVVAEAVVAAEPVVAEPVAAEPVVAAPAAPVEAPAAEV
AAPAVEAAPVSALTSTGRAPNDPREVRRRKREAERLQKEAELAAAAAAEAPVEAVVATEP
APVVAEVVEAAPAAEPAIEQPAPAADEAPRSVEEVVEHKPKAQEEEHEPKPLV
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagat
ggccaacgcctctacgacctggacatcgaatccggtgcacgcgagcagaagaaggccaac
atctataaaggccgtatcactcgcatcgaaccaagcctcgaggctgcctttgtcgatttc
ggctctgagcgccatggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccccgaaggccgcgtcaatatcaaggacgtcctgagcgaaggccaggaagtcatcgtt
caggtcgaaaaagaagaacgtggcaacaagggcgcagccctgaccaccttcatcagcctg
gccggtcgttacctggtgctgatgccgaacaacccgcgtgccggcggcatctcccgccgc
atcgaaggcgaagagcgcaacgaactgcgcgaagccctgaacggcctggtagcccctgcc
gacatgggtctgatcgtgcgcactgccggcctgggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcaactctggaccgccatcaaagaagcctcgctggaccgcgca
gcgcctttcctgatctaccaggaaagcaacgtgatcatccgcgccatccgcgactacctg
cgccaggacatcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgacc
ttcatccgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtt
ccgctgttcaaccgtttccagatcgaaagccagatcgaaaccgccttccagcgcgtcgtc
gaactgccttccggcggctccatcgtcatcgatccgaccgaagccctggtgtccatcgac
atcaactcggcccgcgccaccaaaggcagcgacatcgaagaaaccgccctgcagaccaac
ctggaagcagcggaagaaatcgctcgccagctgcgcctgcgtgacatcggcggcctgatc
gtcatcgacttcatcgacatgaccccggccaagaaccagcgcgccgtggaagagaaagtc
cgcgaatgcctggaagccgaccgtgctcgcgtccaggtcggtcgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccatccctcggcgaaagcagcggcatcgtc
tgcccacgctgcaacggcaccggcatcatccgtgacgtcgaatcgctgtcgctggcgatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagttcgcgcccaagtg
ccgattccggtcgccgccttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgtgctcgtatcgtcatcctgccgaacgaccatctcgaaacgccgcacttc
gaagtccagcgtctgcgcgatgacagcccggaagccagcatcaaccagtccagctacgaa
atcgccgctgccgctgccgaagccgaagaagtccagccagccgccgcgacccgcaccctg
gttcgccaggaagccgccgtcaagaccgctccagcccgcgccaatgcaccggttccaacc
gaagttgccgccgctcctgttgccgctccggccgccattgccgagccaagcctgttcaaa
ggcctggtgaagtccctggtcagcctattcgccaccaaggaagagccagccgctccggtc
gtggttgaaaaaccggccaccgagcgtcctgcgcgcaacgaagaacgccgcaacggtcgc
cagcagagccgcaaccgtaacggtcgccgcgacgaagaacgcaagccacgcgaagaacgc
gcccctcgtgaagaacgcacaccgcgcgaagcccgcgaagagcgtcagccacgtgaagtc
cgcgaggctcgcgaggaagtccaggccaccgctcgcgaagagcgcgcgccgcgtccgcca
cgggaagagcgtcaaccacgcccaccacgcgaagaccgcaagccacgtggcgagcgtgaa
gagcgtgtgcgtgaactgcgcgaaccgctggacgccgctcctgccgctactgctgaagag
cgcccggctcgccagccacgcgaagagcgtcaaccacgcccaccgcgtgaagagcgtcaa
cctcgtgccgaacaggccgctgccgtagctgaagaagagctgctgccgaacgaagagcaa
ctgcaggaagacggccaggagaacgccgaaggcgatcgtccacgccgccgctcccgtggc
cagcgtcgtcgcagcaaccgtcgtgagcgtcagcgtgacgccaacggcaatgtgatcgaa
ggttcggaagaaaacagcgaagagccaagcagcgccgatttggccgcaggcctggcagtc
accgccgccgttgccagcactgtgatcagcgccccggccgaagcccaggctcacgagcag
gccgaacgtgcgaccgccgctaaccaggaagccgcaccgaccgtcgaagcaccggtagtc
gaggccaccactacggtagagattccagcagcacctgctgttgaagtcgcccaggttcat
gaggagcagcgcgaagaacaagccgcggaacccgcagttgttgcagaacaacctgcagta
gttaccgagcctgtggtcgaagcgccagtcgctgaagcaccagcggcagagccagctcag
gaagcacctcgtgccttcgagcgcgccgccgaggcgatcgttgccgaagcgcctgcgcca
gtcgcagaagttgtggctgaagcagtcgtggccgctgaacctgtagttgctgaacctgta
gccgccgagcctgtggttgccgcaccggcagcaccggttgaagcacctgccgccgaagtg
gctgcgccagctgtcgaggccgcaccggtcagcgccctgaccagcaccggtcgcgcgcca
aacgacccacgtgaagtgcgtcgtcgcaagcgcgaagccgagcgtctgcagaaggaagcc
gaactggctgccgctgccgccgctgaagctccggtagaagccgtagtggctaccgagcct
gcgccggtggttgccgaggtggtcgaggcagctcctgctgccgaaccggccatcgagcaa
cctgcccctgccgccgacgaagccccgcgctccgtcgaagaagtggtagagcacaagccc
aaggcccaggaagaagagcacgagcctaaacccctcgtctga
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