Pseudomonas chlororaphis subsp. piscium: C4K32_2388
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Entry
C4K32_2388 CDS
T09060
Name
(GenBank) Transcriptional regulator NfxB
KO
K18294
TetR/AcrR family transcriptional regulator, mexCD-oprJ operon repressor
Organism
pchp
Pseudomonas chlororaphis subsp. piscium
Module
pchp_M00639
Multidrug resistance, efflux pump MexCD-OprJ
Brite
KEGG Orthology (KO) [BR:
pchp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pchp03000
]
C4K32_2388
09183 Protein families: signaling and cellular processes
01504 Antimicrobial resistance genes [BR:
pchp01504
]
C4K32_2388
Transcription factors [BR:
pchp03000
]
Prokaryotic type
Helix-turn-helix
TetR/AcrR family
C4K32_2388
Antimicrobial resistance genes [BR:
pchp01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexCD-OprJ [MD:
M00639
]
C4K32_2388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_IclR
TetR_N
LacI
HTH_6
Xre-like-HTH
HTH_31
HTH_26
DUF6066
SpoIIID
HTH_9
HTH_3
MerR
HTH_10
Motif
Other DBs
NCBI-ProteinID:
AZC69050
LinkDB
All DBs
Position
2564779..2565339
Genome browser
AA seq
186 aa
AA seq
DB search
MSSPASDEKLLKALAVAIVDHPWGTLKELAEAAGVSKATLHRFCGTRDNLIEMLMSHTCE
VMKQIIETADLHQAAPAVALRNLIQLNLAQRELLLFMVFQYRPDTMEPNAEGNRWQPCID
ALDAFFLRAQQEGYLRIDVSAPVLSDLFMTLICGIVDSERLGRAAPAGSALVLEQMFLHG
AATPSS
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgcccgcttccgacgaaaaactcctcaaggcgctggccgtggccatcgtcgac
catccgtgggggacactgaaggaactggccgaggcggcaggggtgagcaaggccaccctg
catcggttctgcggcacccgggataacctgatcgagatgctgatgagccacacctgcgag
gtgatgaagcagatcatcgagaccgcggacctgcaccaggccgcgccggcggtagccctg
cgcaatctgatccagttgaatctggcgcagcgcgagttgctgctgttcatggtcttccag
taccgcccggacaccatggagccgaacgccgagggcaatcgctggcagccatgcatcgac
gccctggacgccttcttcctgcgggcgcagcaagagggttacctgcgcatcgacgtcagc
gcgccggtgttgagcgatctgttcatgaccctgatctgtggcatcgtcgattccgaacgc
ctgggtcgcgcggctccagcaggatcggctttggtcctggagcagatgttcctgcacggc
gcggcaacgccgtcgtcctga
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integrated database retrieval system
