Pseudomonas chlororaphis subsp. piscium: C4K32_2710
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Entry
C4K32_2710 CDS
T09060
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
pchp
Pseudomonas chlororaphis subsp. piscium
Brite
KEGG Orthology (KO) [BR:
pchp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pchp03016
]
C4K32_2710
Enzymes [BR:
pchp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
C4K32_2710
Transfer RNA biogenesis [BR:
pchp03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
C4K32_2710
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GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Motif
Other DBs
NCBI-ProteinID:
AZC69372
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All DBs
Position
2910552..2911097
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AA seq
181 aa
AA seq
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MNDESREQGEPFKRLFFALPCTAAQRRAIAEWRGALGLRSGRPVAAENFHLTLMFLGSVA
VAQIPRICAAAAGVRTSGEPLNVPLDRLEVWRRAGVLLLAPTQAPLELRQLVYALQEALL
PLGLIDSPREFRPHLTLMRDYRAPVPESETPADFHLSARHFALFESHKGRYRPLAEWALA
R
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatgagtcccgcgagcagggcgagccgttcaagcggctgttcttcgccttgccc
tgcacagccgcccaacgccgggccatcgccgagtggcgcggcgcgcttggcctcaggagt
ggccggccggtggcggcggaaaactttcatctgaccctgatgttcctgggctcggtcgcg
gtggcgcagattccgcggatctgcgccgcggcggcgggcgtgcgaacctccggtgagccg
ctgaacgttccgctcgaccgcctggaggtctggcgccgggccggggtcttgttgctggcg
ccgacacaagcgccgctggagttgcgccagctggtgtatgccttgcaggaagcgctgctg
ccactggggctgatcgattcgccgcgggaatttcgtccgcacttgaccttgatgcgcgac
tatcgggcgccggtgcccgagtccgagactcctgcggattttcacctgagtgcccgtcac
tttgccctgttcgagtcccataaaggccgttatcggccgctggccgagtgggcgctggcg
cggtga
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