Pseudomonas chlororaphis subsp. piscium: C4K32_3017
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Entry
C4K32_3017 CDS
T09060
Name
(GenBank) Ku domain protein
KO
K10979
DNA end-binding protein Ku
Organism
pchp
Pseudomonas chlororaphis subsp. piscium
Pathway
pchp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pchp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C4K32_3017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pchp03400
]
C4K32_3017
DNA repair and recombination proteins [BR:
pchp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C4K32_3017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Motif
Other DBs
NCBI-ProteinID:
AZC69679
LinkDB
All DBs
Position
complement(3247467..3248339)
Genome browser
AA seq
290 aa
AA seq
DB search
MARAIWKGAISFGLVHIPVALVSATSSQGVDFDWLDQRTMDPVGYKRINKVTGKEVGKEH
IVKGVAYEKGRYVLLSEDEIRSAHPLSTQTIDIFAFVDSQQIPLQNIDTPYFLAPDKRGG
KVYALLRETLQSTSKVALALVVLHTRQHLAALMPLESALVLVMLRWPADVRSLDELSLGP
EVTQPELTKGERDMAKRLVADMSADWQPEDYHDSFTEKIMALVEKKARAGKIEDVESGAG
EAQRRSADVIDLTEMLKRSLGGKSRSKPPASPDKPGKAAATKKTTKRSRA
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atggcacgggcaatctggaaaggcgcgatcagttttggcctcgttcatattccggtggcg
ctggtctcggcgacctcctcccagggcgtcgacttcgactggctggaccagcgcaccatg
gacccggtgggttacaagcggatcaacaaggtcaccggcaaggaagtcggcaaggaacat
atcgtcaaaggcgtggcgtacgaaaaaggccgctatgtgctgctcagcgaggacgagatc
cgctcggcccacccactgtcgacccagaccatcgacatcttcgccttcgtcgacagccag
cagatcccgctgcagaacatcgacaccccctacttcctggccccggacaagcgtggcggc
aaggtctatgcgctgctgcgcgaaaccctgcagagcacctcgaaagtcgccctggccctg
gtggtgctgcacacccgccagcatctggcggcgctgatgccgctggagtcggcgctggtg
ctggtgatgctgcgctggccggccgatgtgcgcagcctcgacgaactgagcctggggccg
gaggtgacccagccggagctgaccaagggcgaacgggacatggccaagcgcctggtggcg
gacatgagcgccgattggcagccggaggattaccacgacagcttcaccgagaagatcatg
gccctggtggagaaaaaggcccgggccggcaagatcgaggacgtggaaagcggcgccggc
gaagcgcaacgcaggagcgccgatgtcatcgacctcaccgagatgctcaagcgcagcctg
ggcggcaagtccaggagcaagccgcccgccagcccggacaagcccggcaaggccgctgcg
accaagaaaaccacgaagcgatcccgtgcctga
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