Pseudomonas chlororaphis subsp. piscium: C4K32_3270
Help
Entry
C4K32_3270 CDS
T09060
Name
(GenBank) RNA polymerase ECF-type sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pchp
Pseudomonas chlororaphis subsp. piscium
Pathway
pchp02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pchp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
C4K32_3270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchp03021
]
C4K32_3270
Transcription machinery [BR:
pchp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C4K32_3270
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
PhyR_sigma-like
HTH_23
GerE
HTH_11
HTH_38
HTH_24
HTH_28
HVO_A0261_N
RovC_DNA-bd
HTH_7
HTH_29
Xre-like-HTH
HTH_Tnp_ISL3
HTH_31
DUF8073_M
TnsD
DUF6362
HTH_40
MA3
HTH_Mga
HTH_17
HTH_36
Sigma70_r3
Motif
Other DBs
NCBI-ProteinID:
AZC69932
LinkDB
All DBs
Position
complement(3544926..3545435)
Genome browser
AA seq
169 aa
AA seq
DB search
MIEAATPPEQSLHALYRDHRSWLESWLRQRMGNAWDAADLSQDTFLRVLTSSQQLVDLRE
PRAYLVTVGKRLLSNFYTRRKLEQAYLDALASLPEDSVPSPEQRWVLLETLQALDELLDG
LPPLVRRAFLWSQLEGLGYREIAERLDVSERTVKRYMAQAYEHCLLVEL
NT seq
510 nt
NT seq
+upstream
nt +downstream
nt
atgattgaagcagcgacgccaccggagcaaagcctacatgccctgtaccgcgatcatcga
agctggctcgagagttggttgcgccagcgcatgggcaacgcctgggatgcggcggacctg
agccaggacaccttcctgcgcgtgctgaccagctcccagcagctggtcgacctgcgtgaa
ccgcgggcctacctggtgaccgtaggcaagcgcctgctgagcaacttctacacccggcgc
aaactcgagcaggcctacctggacgcgctggccagcctgcccgaagacagcgtgccgtcc
ccggaacagcgctgggtgctgctggaaaccctgcaagccctcgacgaactgctcgacggc
ctgccgccgctggtgcgccgggcgtttctctggagccagctggaagggctgggctaccgc
gagatcgccgaacgcctcgacgtgtcggaacgcaccgtcaagcgctacatggcccaggcc
tacgaacactgcctgctggtggagctgtga
DBGET
integrated database retrieval system
