Pseudomonas chlororaphis subsp. piscium: C4K32_3841
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Entry
C4K32_3841 CDS
T09060
Name
(GenBank) Excinuclease ABC subunit A, putative
KO
K03701
excinuclease ABC subunit A
Organism
pchp
Pseudomonas chlororaphis subsp. piscium
Pathway
pchp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pchp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C4K32_3841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pchp03400
]
C4K32_3841
DNA repair and recombination proteins [BR:
pchp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C4K32_3841
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C4K32_3841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
UvrA_DNA-bind
SMC_N
nSTAND1
AAA_29
AAA_16
DnaJ_CXXCXGXG
AAA_25
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AZC70500
LinkDB
All DBs
Position
complement(4263128..4265788)
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AA seq
886 aa
AA seq
DB search
MTSARNTPSPQVLSSLPAHSSGFVRVRGAREHNLRNVDVDIPRDALVVFTGVSGSGKSSL
AFSTLYAEAQRRYFESVAPYARRLIDQVGVPDVDAIEGLPPAVALQQQRGTPSTRSSVGS
VTTLSSLIRMLYSRAGSYPPGQPMLYAEDFSPNTPQGACPNCHGLGRVYEVSEASMVPDP
SLTIRQRAVASWPLAWQGQNQRDILVTLGYDVDIPWRDLPKEQRDWILFTEETPTVPVYA
GLTPEQTREALKRKQEPSYMGTFSGARRYVLHTFTHSQSALMKKRVSQFMLGSPCPLCEG
KRLKREALSVTFAGLDIGELSQMPLLQLAEVLKPVAAQAYLEQAEEAGEVWSHEQTQAAR
QERIAQGAPGHVGGPDVRHTPNLSLEKRLAAQRIAQDLLERVSTLTGLGLGYLALERSTP
TLSSGELQRLRLATQLGSQLFGVIYVLDEPSAGLHPADAEALFEALQQLKASGNSLFVVE
HDLQTMRRADWLIDVGPAAGEQGGQVLYSGPPAGLAHVAESQTRAYLFAEQAPARRTARQ
AQGWLRLEGISRNNLNDLSAEFPLGCFTAVTGVSGSGKSSLVSQALLELVGAHLGRPQSN
EEPEELNLEDDAPQASSGEVTAGLERIKRLVQVDQKPIGRTPRSNLATYTGLFDHVRKLF
AATPEARALGYDAGQFSFNVAKGRCPACEGEGFVSVELLFMPSVYAPCPTCHGARYNSQT
LAIKWQDLNIAQVLQLTVQEAVEVFAEQASIRRSLEVLRDIGLGYLRLGQPATELSGGEA
QRIKLATELQRNPRGATLYVLDEPTTGLHPRDVDRLLEQLDNLVRAGHSVVVVEHEMRVV
AQADWVIDIGPGAGDQGGKVVVSGTPQQVARHRKSRTAPFLAQALG
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgacttcagcgcgcaacacgccttcgccccaggttttgtcttccttgccagcgcacagc
tcgggttttgtcagggtgcgcggcgcccgtgaacacaacctgcgcaacgtcgacgtggat
attccccgcgatgcgctggtggtgttcactggggtttccggttccggcaaatcgtccctg
gcgttctcgaccctgtatgccgaggcccagcgccgctatttcgaatcggtggcgccttac
gcccggcgcctgatcgaccaggtcggggtgccggatgtcgacgccatcgaaggcctgccg
ccggcggtggccctgcaacagcagcgcggcacgccaagcacccgctcttcggtgggcagc
gtcaccaccttgtccagcctgatccgcatgctttattcccgggccggcagctacccgccg
gggcagccgatgctctacgccgaagacttctcgcccaacaccccacagggcgcctgtccc
aactgccatggcctgggccgggtctacgaggtcagcgaggcgtccatggtcccggaccct
tcgctgaccatccgccagcgcgcggtggcgtcctggcccctggcgtggcaggggcagaac
cagcgcgacatcctcgtgaccctgggttacgacgtcgatattccctggcgcgacctgcct
aaagagcagcgtgactggatcctgttcaccgaagaaacccccaccgtgccggtgtacgcc
gggctgaccccggagcagacccgcgaggccctcaagcgcaagcaggagccgagctacatg
ggcaccttcagcggggcccggcgctatgtgctgcacaccttcacccattcgcaaagcgcg
ctgatgaaaaagcgcgtgtcgcagttcatgctcggcagcccgtgcccgctgtgcgagggc
aagcgcctgaagcgcgaggcgctgtcggtgaccttcgccggcctcgacatcggcgagctg
tcgcagatgcccttgctgcaactggccgaggtgctcaagccggtggctgcccaggcttac
ctggaacaggccgaggaggccggcgaggtctggagccacgaacagacccaggccgcgcgc
caggaacgaatcgcccagggcgcgccggggcatgtcggagggccggatgtgcggcatacg
ccgaacctgtccctggaaaaacgcctggccgcgcaacgcatcgcccaggacctgctggag
cgggtcagcaccctgaccggcctgggcctggggtacctggccctggagcgcagtacgccg
accctgtcgtccggcgagttgcagcgcctgcgcctggcgacccagctgggttcgcagttg
ttcggggtgatctacgtgctcgacgagccttcggcgggcctgcatccggcggacgccgaa
gcgttgttcgaggccttgcagcagctcaaggcttcgggcaattcgctgttcgtggtcgag
cacgacctgcagaccatgcgccgcgccgactggctgatcgatgtcggcccggcggcgggc
gagcagggcggccaggtgctgtacagcggtccgccggcggggctggcccatgtcgcggag
tcgcagacccgcgcctacctgttcgccgagcaggcgccggcccgccgcaccgcgcgccag
gcccagggctggctgcgcctggaaggcatcagccgcaacaacctgaatgacctgagtgcc
gaattccccctcggctgcttcaccgcggtgaccggggtctcgggttccggcaagtcgagc
ctggtcagccaggcgttgctggagctggtgggcgcgcacctcgggcggccgcagagcaac
gaagagccggaagagctgaacctggaagacgacgccccgcaggccagcagcggcgaagtc
accgccgggctggagcggatcaagcgcctggtgcaggtggaccagaaacccatcggccgc
accccacgatcgaacctggcgacctacaccgggctgttcgaccacgtgcgcaagctgttc
gccgccacccccgaggcgcgagccctgggctacgacgccgggcagttctccttcaacgtc
gccaagggccgctgcccggcctgcgaaggcgaaggttttgtcagcgtcgagctgctgttc
atgcccagcgtctatgcgccgtgcccgacctgccacggcgcgcgctacaactcgcagacc
ctggccatcaagtggcaagacctgaacatcgcccaggtcctgcaactgacggtgcaggag
gcggtcgaggtgttcgccgagcaagcgagcatccgccgttccctggaagtcctgcgcgat
atcggcctgggttacctgcgcctcggccagccggccaccgagctgtccggcggcgaagca
cagcggatcaagctggccaccgaactgcagcgcaacccccgcggtgcaaccctgtatgtg
ctggacgagccgactaccggtttgcatccacgagatgtcgatcgcctgctggaacaactg
gacaacctggtgcgggccggccacagcgtggtggtggtcgagcatgaaatgcgcgtggtg
gcccaggccgactgggtgatcgatatcggcccgggcgccggtgaccagggcggcaaagtg
gtggtcagcggtaccccgcagcaggtggccaggcaccgcaagagccgcaccgcgccgttt
ctggcacaggccctggggtga
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