Pseudomonas chlororaphis subsp. piscium: C4K32_4411
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Entry
C4K32_4411 CDS
T09060
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pchp
Pseudomonas chlororaphis subsp. piscium
Pathway
pchp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4K32_4411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchp03019
]
C4K32_4411
03009 Ribosome biogenesis [BR:
pchp03009
]
C4K32_4411
Enzymes [BR:
pchp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C4K32_4411
Messenger RNA biogenesis [BR:
pchp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C4K32_4411
Ribosome biogenesis [BR:
pchp03009
]
Prokaryotic type
rRNA helicases
C4K32_4411
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AZC71059
LinkDB
All DBs
Position
complement(4936142..4937815)
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AA seq
557 aa
AA seq
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MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
RQTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALNLAAIEKERPLVPNSAPRGDRPERSGDRPDRGERERRAPMPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEEGLERLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctcttgaacttcatcccaatattgtcgctgca
gtagtcgctaccggctatgaagagccttcggccattcagcagcagtcgatcccgatcatc
ctcgccggtcacgatatgattggtcaggcgcaaaccggtaccggtaagaccgccgcgttc
gccctgcctatcctgcaccgcattgatccgtccaagcgcgagccgcaagctctgatcctg
gccccaacccgtgagttggcgctgcaagttgcaaccgctttcgaaacctacgccaagcaa
atgccgggcgtaactgtcgtggctgtctacggcggcgcgccgatgggcccacaactgaaa
gcaatccgtaatggcgcacagatcgttgtcgccactccgggccgtctgtgcgaccacctg
cgtcgcgacgaaaaagtcctggctaccgtgaaccacctggttctcgacgaagccgacgaa
atgctcaagctgggcttcatggatgacctggaagtgatcttcaaggccatgccggaaacc
cgtcagaccgtgctgttctcggccaccctgccgcagtcgatccgtgcgatcgccgagcgt
cacctgaaggacccgaaacacgtcaagatccagagcaagacccagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacttctgccgttctcagcctgctg
gaagtggaagatttcgacgctctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagtgccctggaagccaaaggctacaaggccgctgcgctgaacggcgacatcgcc
cagaaccagcgtgagcgcgtgatcgactccctcaaggatggccgcctggacatcgttgtg
gcgaccgacgttgccgcccgtggcctggacgtaccgcgcatcacccacgtattcaacgtg
gacatgccgtacgacccggaatcctacgtgcaccgtatcggccgtaccggccgtgccggt
cgcgaaggtcgtgcactgctgctggtgactccacgcgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggccagaaagtcgctgaagttcgtctgccggacgctcaagccgttctc
gacgcacgcatcaagaagctgaccaacagcctgtcgccactggtggctgacgctgaatcg
acccacggtgatctgctggatcgcctgaccgccgatatcggttgcagcccacgtgccctg
gccgcggccctgctgcgcaaggccaccaacggtcaggcgctgaacctggcagcgatcgag
aaggaacgcccactggtgccgaacagcgcgccacgtggcgaccgtcctgagcgttccggc
gatcgtcctgatcgcggcgagcgtgagcgtcgcgcgccgatgcctctggctgaaggtcgt
gcccgttgccgtaccgcgctgggcgcgcgtgacggtatcgcggccaagaacctgctgggc
gccatcctcaacgaaggcggcctggcccgcgaagccatcggtcgcatccaggtgcgtgac
agcttcagcctggtcgagctgccggaggaaggtctggagcgtctgctgaccaaactgaag
gacactcgcgttgccggcaagcagctgaagctgcgtcgttatcgcgaagactga
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