Pseudomonas chlororaphis subsp. piscium: C4K32_4862
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Entry
C4K32_4862 CDS
T09060
Name
(GenBank) Holliday junction DNA helicase RuvB
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
pchp
Pseudomonas chlororaphis subsp. piscium
Pathway
pchp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pchp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
C4K32_4862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pchp03400
]
C4K32_4862
Enzymes [BR:
pchp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C4K32_4862
DNA repair and recombination proteins [BR:
pchp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
C4K32_4862
RecFOR pathway proteins
C4K32_4862
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
RuvB_C
AAA
AAA_5
AAA_22
Mg_chelatase
TIP49
AAA_3
AAA_14
AAA_16
nSTAND3
AAA_17
AAA_28
Rad17
RNA_helicase
ABC_tran
AAA_18
NTPase_1
NB-ARC
TsaE
AAA_24
SAM_Ribosomal_mS41
Sigma54_activ_2
RsgA_GTPase
NACHT
AAA_11
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
AZC71501
LinkDB
All DBs
Position
complement(5389918..5390976)
Genome browser
AA seq
352 aa
AA seq
DB search
MIEADRLIAATGPREREEVQDRAIRPVSLAEYIGQPTVREQMELFIQAARGRNESLDHTL
IFGPPGLGKTTLANIIAQEMGVSIKSTSGPVLERPGDLAALLTNLEPNDVLFIDEIHRLS
PIVEEVLYPAMEDFQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGMLTNPLRDRFGIVQ
RLEFYSTADLATIVGRSAGILGLPLDPDGAFEIARRARGTPRIANRLLRRVRDFAEVRAK
GHITKPIADLALNLLDVDERGFDHQDRRLLLTMIEKFDGGPVGVDSLAAAISEERHTIED
VLEPYLIQQGYIMRTPRGRVVTRHAYLHFGLNIPSRLGEMPVVDEFLDAVDD
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
gtgatagaagcagatcgtctgatcgccgccacgggcccccgtgagcgcgaggaagtccag
gaccgtgcgattcgccccgtcagcctggccgaatacatcggccagccgacggtgcgcgag
caaatggagctgttcatccaggctgcccgcgggcgcaacgagtcgctggatcacaccctg
atcttcggcccgccgggcttgggtaagaccacactggccaacatcatcgcccaggaaatg
ggcgtgtcgatcaagagcacctcgggcccggtgctggagcgcccaggggacttggcggcg
ctgctgaccaatctcgaaccgaacgacgtactgtttatcgatgaaatccatcgcctgtcg
ccgatcgtcgaggaagtgctgtacccggccatggaagatttccagctggacatcatgatc
ggcgaagggccggcggcgcgttcgatcaagctcgacctgccgccgttcaccctggtgggg
gcgacgacccgcgcgggcatgctgaccaacccgctgcgcgaccgcttcggcatcgtccag
cgcctggagttctacagcacggcggacctggcgaccattgtcgggcgctccgccggcatt
ctcggcttgccgctggacccggacggcgcctttgaaatcgcccggcgtgcccggggtacg
ccgcggatcgccaaccgtttgttgcgccgggtgcgggactttgccgaggttcgtgccaag
gggcacatcaccaagcccatcgccgacctggcactgaatctgctggatgtcgacgagcgt
ggcttcgaccaccaggaccggcgcctgctgctgaccatgatcgagaagttcgacggtggg
ccagtgggggtcgacagtctggcggccgctatcagcgaagagcggcataccatcgaggac
gtactcgagccctatctgatccagcagggctatatcatgcgtacgccgcgggggcgtgtg
gtgacccggcatgcctatctgcatttcggtctaaacattccgtcacgattgggggagatg
cctgtggtagacgaattcctcgatgccgtggacgattaa
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