Pseudomonas chlororaphis subsp. piscium: C4K32_5218
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Entry
C4K32_5218 CDS
T09060
Name
(GenBank) Deoxyribodipyrimidine photolyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
pchp
Pseudomonas chlororaphis subsp. piscium
Brite
KEGG Orthology (KO) [BR:
pchp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pchp03400
]
C4K32_5218
Enzymes [BR:
pchp01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
C4K32_5218
DNA repair and recombination proteins [BR:
pchp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
C4K32_5218
Prokaryotic type
C4K32_5218
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
AZC71856
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All DBs
Position
5754948..5756393
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AA seq
481 aa
AA seq
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MQLIWLRSDLRLHDNTALSAATQRGPTVAVYLLSPRQWQAHDDAPCKVDFWLRNLEQLSG
DLARLNIPLLIREAPSWELAPQVLLQLCRELAIEALHVNEEYGIHESRRDTAVANLLKGQ
GVSFHSYLDQLLFRPGSVLTRSGGYFQVFSQFRKVCYNRLHSTLPPQLAAPRMQATLKIK
ADAVPRQVEGFSTPDPHLQALWPAGENVAQQRLAHFAEAQLDHYQAERDFPAKPGTSQLS
PYLTAGVLSPRQCLHAALQNNRGEFASGSPGAVTWINELLWREFYKHILVGYPRVSRHRA
FRPETEAVAWRDAPDELAAWQQARTGLPIIDAAMRQLLETGWMHNRLRMIVAMFLTKNLL
IDWRLGERFFMRHLIDGDLAANNGGWQWSSSTGTDSAPYFRIFNPLSQSQRFDSQGTFIK
RWLPELAGLNEKDIHNPAAMGGLFGVAGYPPPMVDLSMSRERALAAFKNLPPRLVAERYR
E
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcaactgatctggctacgcagcgacctgcgtctgcatgacaacaccgcgttgagcgcc
gcgacccagcgcgggccgactgtggccgtatacctgctgagcccacggcaatggcaagcg
catgacgatgcgccgtgcaaggtcgacttctggctgcgcaacctggagcagttgagcggc
gacctggcccggctgaacatcccgctgttgatccgcgaagcgccgagctgggagctggcg
ccccaggtgctgctgcaactgtgccgggagctggccatcgaggcgctgcacgtcaacgag
gaatacggcattcacgaaagccgccgcgatacggcggtggccaacctgctgaagggccag
ggcgtgagtttccacagttacctcgaccagttgctgttccgtcccggcagcgtactgacc
aggagcggcggctacttccaggtcttcagccagtttcgcaaggtctgctacaaccgactg
cacagcaccctgccgccacagctggcggcacccaggatgcaagccacgctgaagataaag
gccgatgcggtgccccggcaggtcgagggtttctccacacccgacccgcacctgcaagca
ctctggccagctggcgaaaacgtggcgcaacaacgcctggcgcattttgccgaggcgcag
ctcgaccactaccaggcagaacgcgacttcccggccaagcccggcaccagccagctttcg
ccctacctcaccgctggcgtgctgtcgccacgccaatgcctgcacgcggccctgcaaaac
aaccggggcgagttcgccagcggcagccccggcgccgtcacctggatcaacgaactgctc
tggcgcgagttctacaaacatatcctggtgggctacccgcgggtgtcccggcaccgggcc
ttccgcccggaaaccgaagccgtggcctggcgcgatgcccccgatgagctggcggcctgg
cagcaggcccgcaccggcctgccgatcatcgacgccgccatgcgccagttgctggaaacc
ggctggatgcacaaccgcctgcggatgatcgtggccatgttcctgaccaagaacctgctg
atcgactggcgcctgggcgaacgttttttcatgcgccacctgatcgacggcgacctggcg
gcgaacaatggtggctggcagtggagttcatccaccggcaccgattcggcaccctacttc
cggatcttcaaccccttgagccagtcgcaaaggttcgacagccaagggactttcatcaag
cgctggctgccggagctggcggggctgaatgaaaaagatatccacaacccggccgccatg
ggcggcctgttcggcgtggccggttacccgccgccgatggtcgatctgtcgatgtcccgc
gagcgcgccctggcggctttcaagaacctgccgccgcggctggttgccgagaggtatcgg
gaataa
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