Pseudomonas chlororaphis subsp. piscium: C4K32_5495
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Entry
C4K32_5495 CDS
T09060
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pchp
Pseudomonas chlororaphis subsp. piscium
Brite
KEGG Orthology (KO) [BR:
pchp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchp03019
]
C4K32_5495
Enzymes [BR:
pchp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
C4K32_5495
Messenger RNA biogenesis [BR:
pchp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
C4K32_5495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
ResIII
Flavi_DEAD
AAA_22
AAA_30
HA2_N
AAA_19
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AZC72122
LinkDB
All DBs
Position
complement(6043165..6045696)
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AA seq
843 aa
AA seq
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MNSLPIDEVLPALREALATRHEAVLEAPPGAGKTTRVPLALLNEPWLAGQRILMLEPRRL
AARAAAERLASELGEKVGETVGYRIRLDSKVGPNTRIEVVTEGILTRRLQDDPALEGVGL
LIFDEFHERSLDADLALALSLNGRDLFRDEQPLKILLMSATLEGERLAGLLDDAPILRSE
GRMFPVDVRWGRPFQPGEFIEPRLVQTIVEALNDESGSVLVFLPGQAEIRRVHQQLADAV
GERPEILLCPLHGELDLAAQRAAIEPAPPGQRKVVLATNIAETSLTIDGVRVVVDAGLAR
VPRFDPGSGMTRLDTQRVSRASATQRAGRAGRLEPGVCYRLWSQDQHEQLAAYGSAEILQ
ADLAGLALQLARWGVTPAQLVWLDVPPGAAYAQAQDLLERLGALTAKAGEDWKLTPHGQA
MAELPAHPRIAHLLLRGQALGLANMACDVAALLGERDILRGGGADLHSRLVLLSGEERAA
RGAQGGVQRARQLARQYRGYLRGQPSQAVADPDHPRWLGALLALAYPDRVAQQRRPGGAE
YRLANGRAALFSETDSLMKQPWLVIADLGSRQGQREERIYLAADFDPALFDSVLAEQVRS
VDQLDWDEREGVLRAERQRKVGELVLSREPLTGLDEAARCQALVNLVRRKGLELLPWTPE
LRQWQARVALLRQLDLEAKGESEWPDVSDAALLKSLESWLLPYLGKVSRLSHFANLELAG
IVHNLLPWPLPQRLDELAPHHLRVPSGSSIRLDYSEQPPILAVRLQELFGLAETPRIAGG
RQVVKLHLLSPARRPVQVTQDLANFWRSTYAEVKKDLKGRYPKHYWPDDPLVAEATARAK
PRK
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgaattctttgccaattgatgaagttttacccgccttgcgtgaagccctggcgacacgc
cacgaggccgtgctcgaagcaccgcccggcgccggtaagaccacacgtgtgcctttggcc
ctgttgaacgaaccctggctggccggacaacgcattctcatgctcgaaccgcggcgcctg
gcggcgcgggcggcggccgaacggctggccagcgaactgggggaaaaggtcggcgaaacc
gtgggctaccgcattcgcctcgacagcaaggtcggcccgaacacccgcatcgaagtggtc
accgagggcatcctgacccgtcgcctgcaggatgatccggcgctggaaggcgtcggcctg
ctgatcttcgacgaatttcatgaacgcagcctcgacgccgacctggccctggccttgagc
ctcaatggccgcgatctgttccgcgatgagcagccactgaaaatcctcctgatgtcggcg
accctggaaggcgagcgcctggccgggctgctggacgacgcgccgatcctgcgcagtgaa
ggccgcatgttcccggtcgatgtgcgctgggggcggccttttcagccaggcgagttcatc
gagccgcgactggtgcagaccattgttgaagcgctgaacgatgaaagcggcagcgtcctg
gtgttcctgccggggcaggccgagatccgccgggtgcatcaacagctggccgatgccgtg
ggcgagcgcccggagatcctgctctgtccgctgcacggtgagctggacctggcggcgcag
cgcgcggccatcgaaccggctccgcccggccagcgcaaagtggtgctggcgaccaatatc
gccgagaccagcctgaccatcgacggcgtgcgcgtggtggtcgatgccgggctggcgcgg
gtgccgcgtttcgacccgggcagcggcatgacccgcctcgacacccagcgtgtttcccgg
gccagcgccacccagcgcgccggtcgggccgggcgcctggagccgggcgtgtgttatcgc
ctgtggtcccaggaccaacacgaacagctggcggcctatggcagtgcggaaatcctccag
gcggacctggcgggcctggccctgcagctggcgcgctggggtgtgacgccagcgcaactg
gtatggctggatgtgccgcccggcgcggcctatgcccaggcccaggacctgctcgaacgc
ctcggcgcgctgacggccaaagccggcgaggactggaagctgaccccccacggccaggcg
atggccgagttgccggcccatccgcgcattgcccatctgttgttgcgcggccaggccctg
gggctggcgaacatggcctgcgacgtcgccgccttgctcggcgagcgcgacatcctgcgc
ggcggcggtgccgacctgcatagccgcctggtgctgttgtccggcgaggagcgcgcggcc
cgtggcgcccagggcggggtgcagcgggctcggcaactggctcggcagtaccgcggttat
ctgcgcgggcagccgagccaggcggtggcggacccggaccatccgcgctggctgggcgcc
ttgctggcgctggcctatccggatcgggtcgcccagcaacgccgtcccggcggtgccgag
taccggctggccaacggccgcgcggcgttgttcagcgagaccgacagcctgatgaagcag
ccctggctggtgatcgccgacctgggcagtcgccaggggcaacgggaagagcgtatctac
ctggcggcggatttcgatccggcgctgttcgactcggtcctggccgagcaggtgcgcagc
gtcgaccagcttgactgggacgagcgcgaaggggtgttgcgggccgagcggcagcgcaag
gtcggcgaactggtgctcagccgcgagccgttgaccgggctggacgaggcggcgcggtgc
caggccctggtcaatctggtgcggcgcaagggcctggaactgttgccctggaccccggag
ttgcgccagtggcaggcccgggtggccttgttgcgccagctcgatctagaggccaagggc
gagagtgagtggccggatgtcagtgacgcggccctgctcaagagcctggagagctggctg
ctgccgtacctgggcaaggtttcgcgcctcagccacttcgccaacctggagctggccggc
atcgtccacaacctgctgccatggccattgccgcagcgcctggacgagctggcgccgcat
cacctgagggtgccgtccggctcgtcgatccgcctcgattacagcgagcagccaccgatt
ctcgcggtgcgcctgcaggagttgttcggcctggcggaaacgccacggatcgccggtggc
cgacaggtggtcaagctgcacctgctgtccccggcacggcggccggtgcaggtcacccag
gacctggcgaacttctggcgcagcacctacgccgaggtgaagaaggacctcaagggccgc
tacccgaaacactactggccggatgacccgctggtggccgaggccacagcccgcgccaaa
ccgcgcaagtaa
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