Pseudomonas chlororaphis subsp. piscium: C4K32_5881
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Entry
C4K32_5881 CDS
T09060
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pchp
Pseudomonas chlororaphis subsp. piscium
Pathway
pchp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4K32_5881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchp03019
]
C4K32_5881
Enzymes [BR:
pchp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C4K32_5881
Messenger RNA biogenesis [BR:
pchp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C4K32_5881
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AZC72498
LinkDB
All DBs
Position
6435172..6437031
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AA seq
619 aa
AA seq
DB search
MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN
PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIPDGDLMGFDASAVEAEKPEVRERPDVRNPRNSRGPRGDGPNGGGGGGG
RKDKGKDKGKEKPAARGDRPAREQKPREGTPAREQRQPTPRADRAPDEFLDDDVDNFGNR
ADYVSPYQNKNNQSRGRRPGAPGQGAAANSNAPRSGGQGRSGGPRNSSGASTGTPPAKRN
GPRSGAPRDGQARREESRNRRPARDDQARQEPAVQNPRGNQPKIMHKESKADRFPTPEQL
DQLPSRPRGEKPALLTRNR
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtcggtgccatcgaagccgccggc
tacacccagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggtcgcggcacagacaggtactggtaaaaccggcggtttcgcccttccgatcctg
gaacggttgtttcccaacggtcacccggacaaatcccagcgtcatggcccgcgccaaccg
cgcgtcctggtcctgaccccaacccgcgaactggccgcgcaagtgcacgagagcttcaag
gtctatgcccgcgacctgaagttcgtcagtgcctgcatcttcggcggcgtcggcatgaac
ccacaggttcaggccatggcccgcggcgtcgacgtgctggtggcctgccccggccgcctg
ctcgacctggccggccagggcagcgtcgacctgtcccacgtggaaatcctcgtgctcgac
gaagccgaccgcatgctcgacatgggcttcgtccatgacgtgaagaaagtcctcgcacgc
ctgcccgccaagcgccagaacctgctgttctccgcgaccttctccaaggacatcacggac
ctggccggcaagctgctgcacaaccccgagcgcatcgaagtcacgccgccgaacaccacg
gtcgagcgtatcgagcaacgggtgttccgcctggccgccagccacaagcgtgccttgctg
gcccacctgatcaccgctggcgcctgggaacaggtactggtcttcacccgtaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcacggcctgaccgccgtcgccatccac
ggcaacaagagccagaacgcccgtaccaaggccctggccgacttcaaggccggtgaagtg
cggatcctggtcgccaccgacatcgccgcccgcggcctggacatcgaccagttgccacac
gtggtcaacttcgaactgccgaacgtcgacgaagactacgtgcaccgcatcggtcgtacc
ggccgtgccggtcgttcgggcgaagcgatctcgctggtcgcgccggacgaagagaagctg
ctcaaaagcatcgagcgcatgaccaagcagaagatccccgacggcgatctgatgggcttc
gacgccagcgccgtggaagccgagaaaccggaagtacgcgagcgtccggacgtgcgtaac
ccacgcaattcccgtggcccgcgtggcgacggtccgaatggcggcggtggtggtggcggt
cgtaaagacaaaggcaaggacaagggcaaggaaaaaccggccgctcgcggcgaccgtcca
gcccgtgagcagaaacctcgcgaaggtaccccggcccgcgaacagcgccagccgacgcca
cgcgctgaccgtgccccggacgagttcctggacgacgacgtggacaacttcggcaatcgc
gccgactacgtcagcccgtaccagaacaagaacaaccagagccgcggtcgccgtccaggc
gcgccaggccagggcgcggcagccaacagcaatgcgccgcgcagtggcggccagggtcgc
tccggcggtccgcgcaacagcagcggcgccagcaccggcactccacctgccaagcgcaac
ggcccacgcagcggcgctccacgtgacggccaggcccgtcgcgaagagtcgcgcaatcgt
cgtccggcccgcgacgaccaggcgcgtcaggaaccggcggtgcagaacccgcgcggcaac
cagccgaagatcatgcacaaggaatcgaaagccgaccgcttcccgactcccgagcagctc
gatcaactgccaagccgcccacgtggcgagaaaccagccttgctgacccgcaatcgctga
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