Pontibacillus chungwhensis: QNI29_00365
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Entry
QNI29_00365 CDS
T09116
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pchu
Pontibacillus chungwhensis
Pathway
pchu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pchu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QNI29_00365 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pchu03400
]
QNI29_00365 (mfd)
Enzymes [BR:
pchu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QNI29_00365 (mfd)
DNA repair and recombination proteins [BR:
pchu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QNI29_00365 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
UB2H
AAA_22
Rop-like
Motif
Other DBs
NCBI-ProteinID:
WIF98203
LinkDB
All DBs
Position
69687..73214
Genome browser
AA seq
1175 aa
AA seq
DB search
MQGLKQFLTQQDDIHSIISGFSSGMKEQFVSGLSGSSRGVLISLLEESAKRPVLVVTHQL
MQAQQLYEDLLGLTEPEEVHLYPVNELIASEIAVASPELRSERIEALNHWSERKSGILIA
PVAALKRILPPTSYWENYQLPFEVGGVIQLEDYMKQLVDMGYERADMVSAPGEFSMRGGI
MDIYPLTQPNPLRIEFFDDEVDSIRYFDSESQRSLEKVNRVTIGPASELLLTDEDLARAA
QKLSESFADTLKNLKSPELKETLSENIERDIERLKQQERFQEMYKYISLYYEESASLLDY
LPDNGLMVFDEMSRIQETATRLDEEEAEWYSSLLESGQMVRDLSISYNWSDVWHSIHHPR
LYMSVFLRHIPNTQPENIVNISCRAMQQFHGQMNLLQTEMDRWQKGDYSVLIVAPNESRA
EKIQAVLEDYDMEAVVSERRPAFPLTNPTIMVGHLTTGFELPMHKVAVLTENELFKKRST
RPKRKKKISNAERIKSYQELKVGDYVVHAHHGIGKYLGIETLELNGLHKDYMLVKYSGDD
KLYVPIDQIDLVQKYVGSESKEPKLYKLGGSEWKKVKSRVQSSVEDIADDLIKLYAEREA
TKGYAFAEDTEMQREFEAAFPYQETEDQIRCIEEIKTDMEKVRPMDRLLCGDVGYGKTEV
AIRAAFKAIADGKQVVILVPTTILAQQHYETIRERFQDFPIEIGLLSRFRTRKQQKETTE
GLEKGTVDLVVGTHRILSKDIKVKDLGLLIVDEEQRFGVKHKEKIKQMKTNVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPIQTYVLEYNHVFIREAIERELARGGQVFFLYN
RVENIERMAEEISALVDEARVSYAHGQMNESELENVMFSFLEGESDVLVSTTIIETGVDI
PNVNTLIVYDADRMGLSQLYQLRGRVGRSNRVAYAYFTYQKDKVLSEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGSQQHGFIDSVGFDMYSQMLNDAIEAKQKGKEVEETKP
FEPELTLSLDAYIPDSYIADEKQKIDMYKRFQSIESQEDLHDLREEMIDRFSDYPEQVEN
LYQVAVLKLAAKKERVESISEKKQKIELLMEADASQQIDGAKLFEIANQYGRMIQLGTEG
QQLKVVFKWDRNTAHHRYKTIEEFLQQLPEAKHSA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaggactcaagcaatttctaacacaacaagatgatatccactccattatttcagga
ttttcatcaggcatgaaagaacagtttgtatcagggctttcaggttcttcgcgtggggtc
ttaatatccttacttgaagaatctgcgaagcgccctgttttagtagtgacccatcagctt
atgcaagctcaacaactctatgaagatttgcttgggctcacagagcctgaggaagttcat
ttatatccagtcaatgaattaattgcttcggagattgcggtagcaagccctgagttaaga
agtgagcggattgaagctttaaatcattggtctgagaggaaatcgggtattttaattgct
ccggttgccgctcttaaacgtattttgccaccgacctcctactgggagaactatcagctt
ccctttgaagtgggtggggtcattcaattagaagattacatgaaacaactagtcgatatg
ggctatgaacgtgctgatatggtatctgctcctggagaattcagcatgcgcggtgggatt
atggatatctatccactaacacaacccaaccctttgcgcatcgagttctttgacgatgaa
gtggattcaattcgttatttcgattcagaaagtcaacgttcactggagaaagtaaatcgg
gtcacaattggacctgctagtgagttgcttttaaccgatgaagatttagcaagggccgct
caaaagcttagcgagtcttttgcagacacgctgaagaatcttaaatcaccagagttaaag
gaaacgctatctgagaatatcgaacgtgatattgaacgattaaagcagcaggaacgtttt
caggaaatgtataaatatatttctttatactatgaagaatcggctagtttgctagattat
ctaccagacaatgggttaatggtctttgatgaaatgagtcgaattcaagaaaccgctaca
cgcttagatgaagaagaagccgaatggtatagtagtttgttggaatcagggcaaatggta
agggatttatcaatctcctacaattggtctgatgtttggcattccattcaccaccctcgt
ctttatatgtcagtattcctgcgccatattccaaatacccaaccagagaatatcgtaaat
atctcgtgtagggccatgcaacaattccatgggcaaatgaatttgctacaaacggaaatg
gatcgttggcaaaagggagattattccgttctaatcgtagcaccaaacgaatctcgcgca
gagaaaatccaggctgtactcgaagactatgatatggaagcggtcgtttctgaaagaagg
cctgccttcccactgactaatccaacgattatggtaggtcacctgaccacaggttttgag
ttacctatgcataaagtagccgtgttaacagagaatgagttatttaaaaagaggtcaaca
cgtccaaagagaaagaagaagatttcgaatgctgagcggataaaaagttatcaggaattg
aaggtcggagattacgttgttcacgctcatcacggaatcggaaaatacttaggaattgaa
acgcttgaattaaacgggctacataaagactatatgctcgttaagtactcaggtgatgat
aagctatacgttccgattgaccaaattgatttggtccaaaagtatgttggatctgaaagc
aaagaacctaagctttacaagctcggcggaagtgaatggaagaaagtcaaaagccgcgtt
caatcatctgtcgaggatattgcagatgacttaattaagctttatgcagaacgagaggcg
acaaaggggtacgcctttgctgaggatactgaaatgcaaagggagtttgaagctgcattc
ccttaccaggagacagaagaccaaattcgctgtattgaggagatcaaaacggatatggag
aaagtacgtccgatggatcgccttctatgtggtgatgtagggtatggaaagacagaggtc
gccattcgcgcagcctttaaggcgattgcagatggaaagcaagttgttattctggtgccg
acaaccatattagctcagcagcactatgaaaccatccgtgagcgttttcaggatttccct
attgaaattggtttgctaagccgcttccgaacacgaaagcaacagaaagaaacgacggag
ggcttagaaaaggggacggttgatcttgtcgttgggactcatcgtatcctatctaaagac
attaaggtaaaagatctaggtcttcttatagtcgatgaagaacaacgctttggagttaag
cacaaagaaaagattaagcagatgaaaacaaatgtcgatgtcctgacgcttacagcaaca
ccaatcccaagaacgcttcatatgtcgatgctaggcgtacgagatctatccgttatcgaa
acacctcctgagaacaggtttcctattcagacatacgtactcgaatataaccacgtgttt
attcgcgaggccattgaacgagaattggcccgtggtggacaagtcttcttcttgtataac
cgtgtggagaatattgaacgtatggcggaggaaatatcagcactcgtggacgaagcacgt
gtttcttatgcgcatggccaaatgaatgagtctgagcttgaaaatgtgatgtttagtttc
cttgaaggggagtctgacgttcttgtatctaccaccattattgaaacaggggtggatata
ccgaatgtaaacacacttatcgtgtatgatgctgatcgcatgggattgagtcagctttat
cagttaagaggacgtgtagggcgctctaatcgcgtagcctatgcttatttcacttatcaa
aaagataaagtcctatctgaagtagcagagaaacggttacaagctatcaaggaattcaca
gagctgggttcaggctttaagattgccatgcgtgatctatcgatacgaggagcagggaac
cttcttggttctcaacaacatggttttatagattccgttggtttcgacatgtactctcaa
atgctaaatgatgccatcgaagccaagcaaaaaggaaaagaagtcgaagagacgaaaccg
tttgaaccagaacttactctaagcctggatgcttatatcccggattcttatattgcggat
gagaaacagaagattgatatgtacaagcgattccagtccattgaatctcaggaagatctt
catgatctgcgagaagagatgatcgatcgattcagtgattatcctgaacaggtagagaat
ctgtatcaagtagcggtgctgaaacttgctgccaagaaggagcgcgtggaatccattagt
gagaagaaacaaaagattgagttgctgatggaagccgatgctagccagcaaattgatgga
gcgaagttatttgagatcgctaaccaatatgggcgtatgattcaattagggacagaaggc
cagcaattgaaagtcgtctttaaatgggatcgaaacaccgcccatcatcgttataaaacg
attgaggagttcttgcagcaattgcctgaagccaaacattctgcatag
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integrated database retrieval system
