Pontibacillus chungwhensis: QNI29_00690
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Entry
QNI29_00690 CDS
T09116
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pchu
Pontibacillus chungwhensis
Pathway
pchu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pchu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QNI29_00690 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pchu03021
]
QNI29_00690 (rpoB)
03400 DNA repair and recombination proteins [BR:
pchu03400
]
QNI29_00690 (rpoB)
Enzymes [BR:
pchu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QNI29_00690 (rpoB)
Transcription machinery [BR:
pchu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QNI29_00690 (rpoB)
DNA repair and recombination proteins [BR:
pchu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QNI29_00690 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF8727
Motif
Other DBs
NCBI-ProteinID:
WIF98247
UniProt:
A0ABY8UZ22
LinkDB
All DBs
Position
129930..133478
Genome browser
AA seq
1182 aa
AA seq
DB search
MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTASYDWFLEEGLREMFQDISPIEDFTG
NLSLEFVDYTLGEPKYPVDESKERDVTYSAPLRVKVRLLNKETGEVKEQEVFMGDFPLMT
GTGTFVINGAERVIVSQLVRSPSVYFSPKVDKNGKRGYTATVIPNRGAWLEFETDAKDVV
HVRIDRTRKLPITVLLRALGFGTDQEIIDLIGDNQYLKNTLEKDNTENSEKALLEIYERL
RPGEPPTVENAKSLLVSRFFDPKRYDLAHVGRYKINKKLHIKNRLFNQVLAESLADPETG
EILANKGDKLDRRLLDKILPYLEGSEENLGDEIVEPHDGVLDDPMKIQNVKIVDPTDPEG
EKTLNVISNANVDDSTKNITPSDILSAVSYFFNLLHDVGGTDDIDHLGNRRLRSVGELLQ
NQFRIGLSRMERVVRERMSIQDTASITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPL
AELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKV
NKFGFIETPYRRVDPETGKVTAQIDYLTADEEDNYVVAQANAKLEEDGSFQDEEVIARFR
GENTAVKRERIDYMDVSPKQVVSAATACIPFLENDDSNRSLMGANMQRQAVPLMEPESPL
VGTGMEYVSGKDSGAAVVAHHEGIVERVDAKEVLVRRISVVDGKEVEGDLDRYRFQKFIR
SNQGTCYNQKPIVSAGDRIEKGEILADGPSMEKGELALGKNPLVAFMTWDGYNYEDAIIM
SERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALKNLDDRGIIRVGAEVS
DSDLLVGKVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKIFNRED
GDELPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISKILPEEDMPYLPDGTPVDVML
NPLGVPSRMNIGQVLELHLGMASRLLGVRMATPVFDGAREEDVWETLKEAGMARDAKTIL
YDGRTGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGE
MEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGSNVPEPGVPESFKVLIKELQS
LGMDVKMLTADESEIDLRDIEEEEAQSAEKLNVDGDPKDAIE
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
ttgacaggtcaactagttcagtatggacgacaccgccagcgcagaagttatgcgcgtatc
agcgaagtactcgagttaccaaacttaattgaaattcaaactgcttcctatgattggttc
ttggaagaaggtttgagggagatgttccaagacatttcaccgattgaggactttacaggc
aacctttctttagagtttgtagattacactctcggagagcctaagtatcctgtagatgaa
tcaaaagagcgagatgtcacctattcagctcctcttcgtgttaaagtacgcttgcttaat
aaagaaactggcgaagtgaaagagcaggaagtatttatgggtgatttcccactaatgacg
ggtacaggtactttcgtcattaatggtgcagagcgtgttatcgtatctcagttagttcgt
tctccaagtgtctactttagtccaaaagtagataagaacggtaagagagggtatacagct
actgtaattcctaaccgcggtgcttggttagagtttgaaacagatgcaaaagacgtagtt
cacgtacgtattgatcgtactcgtaaacttccgatcaccgtcttattgcgtgcactagga
tttggtacagaccaagagattattgatcttattggtgacaaccaataccttaagaatacg
cttgagaaggataatacggaaaacagtgaaaaagctcttttagaaatttatgagcgactt
cgccctggtgaaccaccaacagtagagaatgcgaagagtttacttgtttcacgcttcttt
gatccaaagaggtatgatcttgcacacgtaggtcgttacaagattaataagaagttacac
atcaagaatcgcctatttaaccaagtgttagctgaatcattagctgatccggaaacaggt
gaaatccttgcaaataaaggggataaactagatcgtcgtttattagataagattctacca
tacctagaaggttctgaagagaatctaggggatgaaatcgtagaacctcatgatggcgtg
ctagatgaccctatgaagattcaaaacgttaagattgtagatccaacagatcctgaagga
gaaaaaacacttaacgtcattagtaatgctaatgtggatgacagtactaagaacattacg
ccttctgatatcctttcagcggtaagttacttctttaacttacttcatgatgtaggtggc
acggacgatattgaccacttaggtaaccgtcgtctacgttcagttggggagcttctacag
aaccaattccgtattggtctatctcgtatggagcgtgtagtacgtgagcgtatgtccatt
caagacacagcttctattactccacaacaactgattaacatccgcccggtcattgcatcc
attaaagagttctttggtagttctcagctatcacagtttatggaccaaacgaacccactt
gcagagttaacgcacaaacgccgtctgtccgcactaggacctggtggtttaacgcgtgag
cgcgcaggtttcgaggtacgtgacgttcactactctcactatggtcgtatgtgtccgatt
gaaacgccagagggaccaaacattggtcttattaactctctttcatcttatgcaaaagta
aacaaatttggctttattgaaacaccatatcgtcgtgtggaccctgaaacagggaaggta
acagctcaaattgattatctaactgctgatgaagaagataactacgttgttgctcaggca
aacgcgaagttagaagaagatggctcattccaagatgaagaagtaattgctcgcttccgt
ggtgagaacacggctgttaaacgtgaacgtattgactatatggacgtttcaccaaaacag
gtcgtttctgctgcgacagcttgtattcctttcttagaaaacgatgactccaaccgctcc
ctaatgggtgcgaacatgcaacgtcaagctgtaccattgatggaacctgaatctccacta
gttggtacaggtatggaatatgtctctggtaaagactcaggtgctgctgttgtagcgcat
cacgagggaattgtagaacgtgttgatgctaaggaagttcttgttcgtcgtatttcagtt
gtagacggtaaagaagtagaaggcgatttagatcgctatcgtttccagaagttcatccgt
tcgaaccagggtacatgttataaccagaagcctattgttagcgctggtgatcgtattgaa
aaaggagaaatccttgctgatggtccttctatggaaaaaggtgaacttgcactaggtaaa
aaccctcttgttgcctttatgacatgggatggttacaactatgaggatgcgattatcatg
agtgaacgtcttgttaaagatgacgtttacacttctattcatattgaagagtatgaatca
gaagcacgtgatacgaagcttggacctgaagaaattactcgcgacatcccgaacgttggg
gaagacgcgcttaagaatcttgatgatcgcggtattatccgcgttggtgcggaagtaagt
gacagtgatctgctagttggtaaagtaacacctaaaggtgtaacagaactttcagcagaa
gaacgcttgctacacgcaatcttcggagagaaagcacgtgaagtacgtgatacatctcta
agagttccacacggtgccggtggtattgtgcttgatgttaagatcttcaaccgtgaagat
ggagacgaattacctcctggtgtaaaccagttggttcgtgtttacatcgttcagaagcgt
aagatctctgaaggtgacaaaatggccggtcgtcacggtaacaaaggtgtaatctctaag
attcttccagaagaagatatgccttatctaccagatggcacaccagtagatgtcatgtta
aacccactcggtgtaccttctcgtatgaacatcggtcaggtactagagttacacttaggt
atggcttctcgcctactaggtgtccgaatggctacgccagtatttgatggtgctcgtgag
gaagacgtttgggaaacattaaaagaagctggaatggctcgtgatgcgaagacaattctt
tatgatggacgtacgggtgaaccgtttgataaccgtgtatcagtaggtgtcatgtacatg
attaaacttgcgcacatggttgatgataaacttcacgcgcgttctactggaccatactcc
cttgttacgcaacaaccattgggtggtaaagctcaatttggtggacagcgtttcggtgag
atggaggtttgggctcttgaagcttacggtgctgcttatacacttcaagaaatcctaacc
gttaagtccgatgatgttgttggacgtgttaaaacgtatgaatcaattgttaaaggttca
aatgtacctgaaccaggtgtaccagaatcatttaaagtattgattaaagagctacagagt
ttaggtatggatgttaagatgctaacagctgatgaatctgagattgacttacgtgatatt
gaagaagaagaagcgcagtcagctgaaaagctgaatgtagatggcgatcctaaagacgca
atagagtaa
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