Pontibacillus chungwhensis: QNI29_01415
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Entry
QNI29_01415 CDS
T09116
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pchu
Pontibacillus chungwhensis
Pathway
pchu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pchu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QNI29_01415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pchu03019
]
QNI29_01415
03009 Ribosome biogenesis [BR:
pchu03009
]
QNI29_01415
Enzymes [BR:
pchu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QNI29_01415
Messenger RNA biogenesis [BR:
pchu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QNI29_01415
Ribosome biogenesis [BR:
pchu03009
]
Prokaryotic type
rRNA helicases
QNI29_01415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WIF98372
LinkDB
All DBs
Position
248508..250037
Genome browser
AA seq
509 aa
AA seq
DB search
MTNFYSLGLSKSVLKSVQEMGFEEATPVQEQTIPLAMDGRDVIGQAQTGTGKTAAFGIPM
IEKIDENMKKIQGLVIAPTRELAMQVATELNKYGQYKGVKVLPVYGGTDMGRQIRSLKQQ
PQIVVATPGRLLDHIRRKTIQLSNIHTAVLDEADEMLNMGFIEDIKDILKAVPMQRQTLL
FSATMPKEIHEIATKMMKKPETVKLKAKQMTVEKIDQYFIEVNDGKKFDTLTRLLDIHTP
DLAIVFARTKKRVDEITEGLSARGFRAEGIHGDLTQGKRMSVLKKFKRGGVEVLVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKEGYAVSFITPREMAHLNLIEKTTG
RKIDRLPIPSNDQALKGQQNIAIEKLVQSIESDNLESYESTAAELLEQHDSVSVIAAALK
MLTKERKDVPVQLSYLAPVSTKQAQKDKQKRGGGGKRYNRKGSGGPKGKGGYNRNGKSGG
GYNKSRSGSGQGYKGNRNRKYQNSNRDNS
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
gtgacaaatttttattcattaggtttatccaaatcagttttaaaatccgttcaagaaatg
ggttttgaggaagctacgccagtccaagagcagacaatccctcttgcgatggatggaaga
gacgtgatcggacaagcgcaaacaggtactggtaagactgcagccttcggtattcccatg
atcgagaagatcgatgagaatatgaagaagattcaaggtcttgtcattgcgcctactcgc
gagctagctatgcaggtagcaacagagttaaataagtacggacaatataaaggcgtaaaa
gtactacctgtttacggtggtacagatatgggacgtcagattcgttcccttaaacaacaa
ccacaaattgttgtcgcaacaccaggtcgtctattagaccatattcgtcgtaaaacgatt
cagctttcaaacattcacacagctgtactagacgaagcagatgaaatgcttaacatgggc
ttcattgaagatattaaagatattcttaaagctgttcctatgcagcgccaaacattactg
ttctcagcaacaatgccaaaagagattcatgaaattgctacgaaaatgatgaagaagcct
gaaacagttaagcttaaagcgaaacaaatgacggttgagaagatcgatcagtacttcatc
gaggtaaatgatggcaagaaattcgatacactaacacgtcttcttgatattcacacgcct
gacttagcgatcgtattcgctcgtacgaagaagcgtgttgatgaaattacagaaggatta
agtgctcgcggattccgtgctgaaggaattcatggtgacctgacacaaggtaagcgtatg
agcgttctgaagaaattcaaacgtggtggggttgaagtactagtagcaacagacgttgca
gctcgtggcctggatatctcaggagttacacacgtatacaactttgatattcctcaagat
cctgaaagctatgtacaccgtataggtcgtacaggtcgtgctggtaaggaagggtacgca
gtttccttcatcacaccaagagaaatggctcaccttaacctaattgagaagactacaggt
cgtaagattgatcgtcttccgattccatcaaatgatcaggctcttaaaggtcaacagaac
attgcgattgagaaacttgttcaatctatcgaatctgacaaccttgagtcatatgagagc
acagcagctgaattactagaacagcacgattctgtttctgttattgcagcagctcttaag
atgctaacgaaagagcgtaaagatgtaccagtacaactaagctaccttgcgccagttagt
acgaagcaagctcaaaaagataaacaaaaacgcggtggtggcggcaaacgctataaccgt
aaaggtagcggtggtccaaaaggtaaaggcggatacaaccgtaatggcaaatctggcggt
ggttataacaaatcccgttcaggcagcggccaaggatacaaaggtaaccgaaaccgtaaa
taccaaaactcaaaccgcgacaattcctaa
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