Pontibacillus chungwhensis: QNI29_01785
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Entry
QNI29_01785 CDS
T09116
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pchu
Pontibacillus chungwhensis
Brite
KEGG Orthology (KO) [BR:
pchu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pchu03009
]
QNI29_01785 (rlmD)
Enzymes [BR:
pchu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
QNI29_01785 (rlmD)
Ribosome biogenesis [BR:
pchu03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
QNI29_01785 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Cons_hypoth95
MTS
TRM5-TYW2_MTfase
Methyltransf_25
N6_N4_Mtase
Methyltransf_15
PrmA
Methyltransf_4
Methyltr_RsmB-F
UPF0020
Methyltransf_32
PCMT
Methyltransf_11
Saf-Nte_pilin
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
WIF98427
LinkDB
All DBs
Position
311945..313444
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AA seq
499 aa
AA seq
DB search
MNKRKNNGYKKSGNKPRNKPNRSEKPYGKHSQGSRGDSKSKGKRNAPDKRKRGGGKAVTA
EVTCSGLTAEGKGIAQWEGKELEVPHLLPGEKAEVLVSKQGPYVNAEVKRVVTPAKERVE
PPCPYYYQCGGCQLQHMTNNAQDRFKQRTIDKLMKPFGKPQPILTMDHPYDYRNKSHTTF
GLNQNRQVIGGLYAQNSHEIIPMDRCLIHDPKADEIVNTIKDYLKNSKMQPYNEDTGQGF
LRHVLIKVGKVSGEIMVVLVTASSEFKGKNNFVKALRKAHPEITTLLMNVNNKKTSMVLG
DQEKVLFGKGTITDTLGGMEFEISAKSFYQINPVQTEKLYGKAIEMAELKGNETVIDAYC
GIGTIGLIASQKAGNVIGVELNKDAVRDAIRNSKRNGVKNARFYQGDAGEFMVNMASKGE
KADVVIMDPPRSGSDEAFLSSVVKLKPKRVVYVSCNPETQARDLKYLVKNGYQVDGIQPV
DMFPQTYHVESVVKLVRKD
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgaataaacgaaagaataacggatacaagaagtctgggaataaacctagaaacaaaccc
aatagatctgagaagccgtacggtaaacattcacaaggaagtcgtggagacagcaagtca
aaaggaaagcgcaatgcgcctgataagcgtaagcgtggcggcgggaaagctgtaacagct
gaagtcacctgttctggcctgactgctgaggggaaagggattgctcagtgggaagggaaa
gagcttgaagtcccgcatctcttacctggagagaaggctgaagtccttgtttcgaaacag
ggcccctatgtaaatgcggaagtgaagcgggtcgttaccccggcaaaagaacgggtggag
ccaccttgtccgtattactatcagtgcggaggctgtcagcttcagcatatgaccaataac
gcacaagaccgtttcaagcagagaacgattgataagctaatgaagccatttggcaagccc
caaccgattctgacgatggaccacccgtatgattatcgaaacaagagccatacaacattt
ggtctgaatcaaaatcgtcaggtcattggcggactgtatgcccagaacagccatgagatc
attccgatggaccgttgtctcattcatgatccgaaagctgatgagattgtgaacacgatt
aaagactatctcaagaattcaaaaatgcagccttacaatgaagacactggacaagggttt
ctgcgtcacgtgctcattaaggtcggtaaggtcagcggagagattatggtcgtactcgtt
actgcgtcgtctgagtttaaagggaagaacaatttcgtgaaagctttacgtaaagctcac
cctgaaatcacaacccttctgatgaacgtgaacaataagaaaacgtctatggttcttggt
gatcaggagaaggttctgtttggtaaagggacgattacagatacgcttggtggaatggag
tttgagatctcggcgaagtcgttctatcaaattaatccggttcagacggagaaattgtat
ggaaaagccattgaaatggctgaacttaaagggaatgaaaccgtgattgatgcctattgc
ggaattggtacaatcggtcttattgccagtcagaaagctggaaacgttattggcgttgaa
ctgaacaaagacgctgtccgtgacgcgattcgtaactcgaagcgtaatggtgtgaagaat
gccaggttctatcagggcgacgctggtgaatttatggtaaacatggcttcaaaaggtgag
aaagccgatgttgtcatcatggacccgccacgaagcggtagtgacgaagcgttcttatca
agtgtcgtgaagctaaagcccaaacgcgtcgtgtatgtatcgtgtaacccagaaacacaa
gctcgtgatctgaaatacttggtgaagaacgggtatcaggtggatggcattcagccagtc
gacatgttcccacaaacgtaccacgtagaatcagttgtgaaattagtacggaaagattaa
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