Pseudomonas cichorii: PCH70_04390
Help
Entry
PCH70_04390 CDS
T03002
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
pci
Pseudomonas cichorii
Brite
KEGG Orthology (KO) [BR:
pci00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pci03009
]
PCH70_04390
Enzymes [BR:
pci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PCH70_04390
Ribosome biogenesis [BR:
pci03009
]
Prokaryotic type
rRNA helicases
PCH70_04390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
PRAI
P-loop_SecA
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
AHF65592
LinkDB
All DBs
Position
complement(468136..469515)
Genome browser
AA seq
459 aa
AA seq
DB search
MTNTAFNTLPLSAAMLANLESLGYAQMTPIQAQSLPVILKGMDLIAQAKTGSGKTAAFGI
GLLNPINPRFFGCQALVMCPTRELADQVAKEIRRLARSEDNIKVLTLCGGVPFGPQIGSL
EHGAHIIVGTPGRIQQHLRKGSLVLDGLNTLILDEADRMLDMGFYDAIADIIEQTPQRRQ
TLLFSATYPVGIKQLASKFMRDPQTVKVEALHADSQIEQIFYEISPEQRLEAVVKVLGHF
RPTSCVAFCFTKQQVQEVVDHLTAKGMSAVGLHGDLEQRDRDQVLAMFANRSTSVLVATD
VAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGETGIAVSLVAPSESQRARAIEEL
QKAPLNWQQYDNLSVKEGGKLLPAMTTLCIGSGRKDKLRPGDILGALTGEAGVPGAQVGK
IAIFDFQAYVAVERSIAKQALERLNNGKIKGKSLRVRIL
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
gtgactaacaccgctttcaacactttgcccctgtccgccgccatgctggctaacctggag
tcgcttggttacgcccagatgacgccgattcaggcgcaaagcctgccggtgattctcaag
ggcatggacctgatcgctcaggccaagaccggcagcggcaagaccgccgcctttggtatc
ggtctgctgaacccgatcaacccgcgcttcttcggttgccaggctctggtgatgtgcccg
acccgcgaactggccgatcaggtggccaaggaaattcgtcgtctggcccgctccgaagac
aacatcaaggtgctgaccctgtgcggcggcgtgccttttgggccgcagatcggctcgctg
gagcatggcgcgcacatcatcgtcggcacgccgggccgtatccagcagcacctgcgcaag
ggctcgctggtactggatgggctgaacacgctgattctcgatgaagcggaccgcatgctg
gacatgggtttctacgacgccatcgccgacatcatcgagcagactccgcaacgtcgccag
accctgctgttctcggccacctacccggtcggcatcaagcaactggcttcaaaattcatg
cgcgatccgcagaccgtcaaggtcgaggcactgcatgccgacagccagatcgagcagatt
ttctacgaaatctctccggagcaacgtctggaagccgtggtcaaggtgcttggccatttc
cgtccgacgtcctgcgtcgcgttctgcttcaccaagcagcaggttcaggaagtggtcgat
cacctgaccgccaagggcatgtccgccgtgggcctgcatggcgacctggagcagcgtgac
cgtgaccaggtgctggcgatgttcgccaaccgcagcacttcggtgctggtggccactgac
gtagcggcccgaggtctggatatcgatgcgctggacatggtcatcaacgtcgagctggcc
cgggattcggaaatccacatccaccgcgtcggtcgtaccggtcgtgcgggtgaaacaggt
atcgcggtcagccttgtagccccttcggaaagccagcgtgcccgggctatcgaagagttg
cagaaagcgcccctgaactggcagcaatacgacaacctgagcgtcaaggaaggcggcaag
ctgctgccagccatgacgactctgtgcatcggttccggccgcaaggacaagctgcgtccg
ggcgatattctgggtgcattgacgggcgaggccggtgttccgggcgcgcaggtcggcaag
atcgccattttcgacttccaggcttatgtggctgtcgagcgcagcatcgccaagcaggcg
ctggagcgtttgaacaatggcaagatcaagggcaagtcgttgcgggttcgtatcttgtaa
DBGET
integrated database retrieval system
