Pseudomonas cichorii: PCH70_06700
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Entry
PCH70_06700 CDS
T03002
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pci
Pseudomonas cichorii
Pathway
pci03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PCH70_06700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pci03400
]
PCH70_06700
Enzymes [BR:
pci01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PCH70_06700
DNA repair and recombination proteins [BR:
pci03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PCH70_06700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
Helicase_RecD
AAA_22
SH3_13
Viral_helicase1
UvrD-helicase
AAA_16
SLFN-g3_helicase
T2SSE
AAA_17
AAA_5
AAA_28
nSTAND3
TraI_hel_assoc_N
NTPase_1
AAA_29
Motif
Other DBs
NCBI-ProteinID:
AHF65823
LinkDB
All DBs
Position
748466..750550
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AA seq
694 aa
AA seq
DB search
MSRTFAELLPAQLDAESLTHLNPLSRVDDLLLLLDRWVERGWLRALDRAFVAFLGELDPH
ADSRVLLAAALSSHQLGHGHVCLDLYETLKEPDFALSLPPEGDMQSVPVMLPSQLLKGLD
GVTWCQALADSPLVALAEDMSPAALQKPLVLSDRRLYLRRYWTYERRIAAALRQRLAQPE
SAPQDLAQRLDALFGAASTAPDAVIDWQKLACALATRRGFSIITGGPGTGKTTTVVRLLA
LLQAPAVQSGQPLRIRLAAPTGKAAARLTESISQQVQSLDVSDGVRQKIPSEVTTVHRLL
GSRPGTRHFRHHASNPLPLDVLVVDEASMIDLEMMANLLDALPPDARMVLLGDKDQLASV
EAGAVLGDLCRDAEQGFYSPQTQAWLEAISGEDLSRSALQQGDAQQHPLAQQVVMLRHSR
RFGQGSGIGQLSRLVNQQLDHEARGLLAARSHKDLFSLALKGEQDQRLERLLLDGHDGGP
QGYRHYLGVLDGQRPAEGAALDDECWTCWAREVLQAFDAFQLLCAVRKGPWGVEGLNQRI
TQALSGAGLIEKDQLWYEGRPVLMTHNDYGLGLMNGDIGIALNLPERDGSGKQVLRVAFP
RNDGSDGVRFVLPSRLNDVETVYAMTVHKSQGSEFAHTALILPEALNPVLTKELIYTGIT
RAKHWFSLIEPRQGVFEEALRRKVKRLSGLMLGL
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcacgtttgccgaactcttgcccgcgcaactggatgccgagagcctgacccat
ctgaacccgctgagccgggtcgacgatttgctgctgttgctcgaccgctgggtggagcgt
ggctggttgcgggcgctggaccgggccttcgtggcctttcttggcgaactcgacccgcac
gccgattcccgggtattgctggcggcagccttgagcagccatcaactgggtcatgggcac
gtatgcctggatctgtatgaaaccctcaaggagccggatttcgccctgtcattaccgcca
gaaggcgacatgcagagcgtaccggtgatgttgccctcacaactgctcaaagggctggat
ggcgtgacatggtgtcaggctctggctgacagtcctttggtcgcattggccgaagacatg
agcccggctgctctgcaaaagccgctggtgttgtctgaccgacgtctgtacctgcgccgt
tactggacgtatgagcgccgcatcgcagcggccttgcgtcaacggctggcccagccggaa
agcgcgccacaggatctggcccagcgtcttgacgctctgtttggcgcggccagtactgcg
cctgacgctgtgatcgactggcagaaactggcctgcgccctggccactcgccgtggcttc
agcatcatcaccggcgggccgggcaccggcaagaccacgaccgtggtgcgcctgttggcc
ttgctgcaagcgcccgccgtgcagagcggtcagccgctgcgcattcgtctggcggcaccc
accggcaaggcggcggcgcggttgaccgagtccatcagtcagcaagtgcaaagcctggac
gtcagtgacggcgtgcggcagaagatccccagtgaagtcaccaccgtgcatcgtctgctg
ggcagtcgtccgggaacgcggcacttccgtcaccacgccagtaatccattgccgctggat
gtgttggtggtcgatgaagcctcgatgatcgacctggaaatgatggccaacctgctggat
gcattgccgcccgatgcacgtatggtgctgttgggcgacaaggatcaactggcgtctgtg
gaagcgggcgccgtgctgggagatttgtgtcgcgatgcggagcaggggttctacagcccg
cagactcaggcctggctggaagcgatcagcggcgaggatttgagcagaagcgcgctgcaa
caaggcgatgcccaacagcatcctctcgcgcagcaagtggtgatgttgcgtcactcgcgg
cgtttcgggcagggcagtggtatcggccagttgtcgcggctggtcaaccagcaactggac
catgaagcccgtgggttgctggcggctcgcagccacaaagacctgttcagtctggccctc
aagggcgagcaggatcagcgtcttgagcgtctgttactcgacggccatgacggcgggcct
caggggtatcgccattacctgggcgtgctggacgggcagcggccagctgagggagcagcg
ctggacgatgaatgctggacgtgctgggcacgtgaggtattgcaggccttcgatgcgttc
cagttgctgtgtgcggtgcgcaaggggccttggggcgtcgagggcttgaaccagcgcatc
actcaggccctgtccggcgcaggcctgatcgaaaaggatcaactgtggtacgaaggccgc
ccggttctgatgacccacaacgattacggccttggcctcatgaacggcgacatcggcatc
gccttgaacctgccggagcgcgatggctcagggaagcaggtcttgcgcgtggccttcccg
cgcaatgacggcagcgacggtgtgcgcttcgtgctgcccagccggctcaatgatgtggaa
accgtgtacgccatgaccgtgcacaaatcccagggctctgagttcgcccacaccgccctg
atcctgcccgaagcccttaacccggtgctgaccaaggaactgatctataccggtatcacc
cgggccaaacactggttcagcctgatcgagccacgccagggcgtgttcgaggaggcgctg
cgccgcaaggtcaagcgcctgagcgggttgatgctggggctttag
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