Pseudomonas cichorii: PCH70_08810
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Entry
PCH70_08810 CDS
T03002
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pci
Pseudomonas cichorii
Pathway
pci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCH70_08810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pci03019
]
PCH70_08810
03400 DNA repair and recombination proteins [BR:
pci03400
]
PCH70_08810
Enzymes [BR:
pci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PCH70_08810
Messenger RNA biogenesis [BR:
pci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PCH70_08810
DNA repair and recombination proteins [BR:
pci03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PCH70_08810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
RecQ_Zn_bind
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AHF66034
LinkDB
All DBs
Position
complement(979428..981527)
Genome browser
AA seq
699 aa
AA seq
DB search
MTHNEAEKLLQAALQNPAAQFRDGQWEAIDALVNQRKKMLVVERTGWGKSSVYFISTRIL
RDRGQGPTIIVSPLLALMRNQIESATRLGIRAVTLNSTNRDQWEESRQQILANQVDCLLI
SPERLANDDFIESTLQPIADRIGLMVIDEAHCISDWGHDFRPDYRRILNILQFLPTNTPV
LGTTATANNRVIEDILDQLGEITIQRGPLVRESLALQNLRLPDQASRLAWLAENIPQLTG
TGIVYTLTQRDTDQVSDWLNDNGISAAAYYGSVTHPDFPESDDYRQHLEARLLNNDLKVL
VATSALGMGYDKPDLGFVIHYQAPGSLVTYYQQVGRAGRGIDYSVGILMSGKEDEDIHDF
FRRSAFPNQGQVRHILGKLEQSDGLGIRDLEEHSNLAKGQIEKTLKYLSAEKKPPVIKTN
SKWHFVAVDYHLDEARISQLTQLREQEWGEVNTYLDSKDCLMAFIRGALNDPAHENCGKC
ANCLESEIVPARINAELIHRAATFIRHAEFPIEPRKQVAKGAFVEYGFPTHLPSAWLAEE
GRILSRWRDGGWGQLAATGKEQNHFDDALVDAMVEMITQRWQPIPSPAWVCCVPSLGHPD
LVPSFAHRLATALKIPFFNAVSKIKENQQQKHQNNSFHQCKNLDGVFALSEELPEGPVLL
VDDMVDSRWTLTVIATLLRRAGSGPVFPLAISSTANKEA
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgacacacaacgaagcggaaaaactcttgcaagccgcattacaaaacccagcggcgcaa
tttcgagacgggcaatgggaagccattgatgcattagtcaaccagcgcaagaaaatgctg
gtcgtggagcgtactggctggggcaagagctccgtgtatttcatcagcacaaggattctg
cgagatcgcggacagggtccgacaatcatcgtttcccccttgctggcattgatgcggaat
cagatcgaatcggctactcggctgggtattcgtgcagtcacgctcaactccacgaatcgg
gatcagtgggaagagtccagacagcaaatacttgccaatcaagtcgattgcctgttgata
tccccagagcgattggccaacgatgactttatcgaaagtacactgcaaccgattgctgac
cggatcggcttgatggtcattgatgaagctcattgcatttctgactggggacatgacttc
aggccagactaccgccgcatcctcaatatcctgcaatttctgccaaccaatacgcccgta
ctgggcaccaccgccacggcaaacaatcgcgtgatcgaagacattctcgatcagttaggt
gaaatcactatccagcgcggccccttggtacgcgagagccttgccttacagaaccttcgt
ctcccggaccaggcaagccgattggcatggctggccgaaaacatcccgcagctcaccggc
accggtattgtctatacgctgacacagcgcgatacggatcaggtatctgactggctgaac
gacaatggcatcagcgcagcagcctattatggcagcgtcacacatcctgacttccccgaa
agcgatgactaccgccagcatcttgaagcccgcctgctcaataacgacctgaaagtactg
gttgccacatccgctctcggcatgggatatgacaaacccgatctgggttttgtcatccac
tatcaggcaccgggctctcttgttacctactaccagcaggttggccgagctggccgaggg
attgattactcggttggcatactgatgtcaggcaaggaggacgaagatattcatgatttc
ttccgccgctctgccttcccgaatcagggacaagtgcgccatattctgggcaagctggag
caatccgatggcctgggcattcgtgacctggaagagcacagcaaccttgcgaagggccag
atcgaaaaaaccctgaaatacctgagcgcggaaaaaaaaccgcccgtgatcaagaccaac
agcaagtggcactttgtcgccgttgactaccacctcgatgaagcacgtatctcccaattg
acccagcttcgcgagcaggaatggggagaggtcaatacatatctggactccaaggattgc
ctgatggcctttatccgcggagcgctaaatgatccagcccatgaaaactgtggcaagtgt
gctaattgtctggaaagcgagattgtgcctgcacggatcaatgctgaactgatacatcgt
gcagcaacctttatccgccatgccgagtttccaatagaaccccgcaaacaggtcgccaaa
ggcgctttcgtggagtatggctttcctacccatcttccatctgcctggctagccgaagaa
gggcggatactgtcacgctggcgggatggcggttggggacaattggcagctacgggcaag
gaacagaatcacttcgatgatgcgctggtagacgcgatggtggaaatgatcacccaacgc
tggcaacctataccgagtcccgcctgggtgtgttgcgttccatcgcttgggcatccagat
ctggtaccgtcttttgctcacaggctggcaacggccttgaaaattccttttttcaacgcc
gtcagcaagatcaaggaaaaccagcagcagaagcaccagaacaacagcttccatcaatgc
aaaaatctcgatggtgtcttcgctctttcagaggagctacccgaaggcccagtgctattg
gtcgatgacatggtcgactcccgctggacgctgacagtgatagccaccctgctgcgtcgc
gcaggcagtggtccggtttttcctttggcaatctcctccactgcaaacaaagaagcatga
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