Pseudomonas cichorii: PCH70_10200
Help
Entry
PCH70_10200 CDS
T03002
Name
(GenBank) atp dependent rna helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pci
Pseudomonas cichorii
Pathway
pci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCH70_10200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pci03019
]
PCH70_10200
Enzymes [BR:
pci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PCH70_10200
Messenger RNA biogenesis [BR:
pci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PCH70_10200
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AHF66173
LinkDB
All DBs
Position
complement(1135516..1136970)
Genome browser
AA seq
484 aa
AA seq
DB search
MTVLKALKKMFGKSEAEQLAPNHAASSPVSPTRPEGESQNRAAQSPALAKEPAAPAQARS
DKPKAERPRRERAPKPPVVAWKLEDFAVEPQEGKSRFHDFDLAPELMHAIHDLGFPYCTP
IQAGVLGYTLKGKDAIGRAQTGTGKTAAFLISIITQLTQTPPPKERYMGEPRALIIAPTR
ELVVQIAKDAAALTKYTNLNVMTFVGGMEFDKQLKQLEARHCDILVATPGRLLDFNQRGE
VHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPHKGERQTLLFSATFTDDVMNLAKQWT
TDPAIVEIEAENVANSNVEQHIYAVAAADKYKLLYNLVTDNGWERVMVFANRKDEVRRIE
ERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTL
PEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPAIEEKLGHKISCEMPPTELLRAVV
RNKA
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgctcaaagcacttaaaaagatgttcggtaaaagcgaggctgagcagctcgcg
cccaaccacgcagcatccagccccgtatccccgactcgccctgaaggcgaatcacagaat
cgtgcagcccagtctccagctctggcaaaggagcccgctgctcccgcgcaggcccgaagc
gacaagcccaaggcagaacgtccacgtcgagagcgcgcgcccaagccgccggtcgtcgcc
tggaagctcgaagatttcgccgtcgaaccccaggaaggcaaaagccgcttccatgacttc
gacctggcccccgaactgatgcacgcgatccatgacctgggctttccgtactgcacgccg
atccaggcgggcgtattgggttacaccctcaagggcaaggacgctatcggtcgcgcccag
accggtacgggcaagaccgccgcgttcctgatctcgatcatcacccagttgacccagacg
ccgccgcccaaagagcgttacatgggcgaaccccgcgccctgatcatcgccccgacccgc
gaactggtggtgcagatcgccaaggacgccgcggcgctgaccaagtacaccaacctcaac
gtcatgacgttcgtgggcggcatggagttcgacaagcagctcaagcaactcgaagcacgc
cattgcgacatcctggttgcgacaccgggacgcctgctggacttcaaccagcgcggtgaa
gtgcatctggacatggtcgaagtgatggtcctcgacgaagccgaccgcatgctggacatg
ggcttcatcccgcaggtccgccagatcattcgccagaccccgcacaagggcgagcgccag
accctgctgttctccgcgaccttcaccgatgacgtgatgaacctcgccaagcaatggacg
accgacccggccatcgtcgaaatcgaagccgagaacgtcgccaacagcaacgtcgaacag
catatctacgcggtggctgcagccgacaagtacaagctgctgtacaacctggtcaccgac
aacggctgggaacgggtgatggtctttgccaaccgcaaggacgaagtgcgccgcatcgag
gagcgtctggtacgtgacggcgtaaacgccgcgcaactgtcaggcgatgttcctcagcac
aaacggatcaagaccctggaaggtttccgcgaaggcaagatccgggttctggtggcgaca
gacgtcgcaggccgcggtattcacatcgatggcatcagccacgtgatcaacttcaccctg
ccggaagtgccggacgattacgtacaccggatcggtcgtacaggccgtgcgggcgccgat
ggcgtttcgatcagctttgccggggaagacgattcctatcagctcccggccatcgaagag
aagctgggtcacaagatcagctgcgaaatgccaccgaccgagttgttgcgggctgtggtg
cgcaacaaggcctga
DBGET
integrated database retrieval system
