Pseudomonas cichorii: PCH70_15430
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Entry
PCH70_15430 CDS
T03002
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
pci
Pseudomonas cichorii
Brite
KEGG Orthology (KO) [BR:
pci00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pci03000
]
PCH70_15430
Transcription factors [BR:
pci03000
]
Prokaryotic type
Helix-turn-helix
Other families
PCH70_15430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
HTH_8
HTH_30
AAA_5
HTH_7
AAA_2
Mg_chelatase
HTH_23
HTH_11
HTH_10
nSTAND6
HTH_20
HTH_22
HTH_29
HTH_24
nSTAND3
HTH_3
HTH_28
HTH_36
DUF2089
HTH_17
AAA_3
Xre-like-HTH
HTH_26
AAA
HTH_AsnC-type
AAA_7
Phage_CP76
dnstrm_HI1420
MerR
HTH_psq
HTH_Tnp_1
Mga
TetR_N
Motif
Other DBs
NCBI-ProteinID:
AHF66696
LinkDB
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Position
complement(1721483..1723336)
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AA seq
617 aa
AA seq
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MANSSASLAHDIIIQDSWTRCRDFGLSHQSRPSFGGLPGAQVSQLLERHNALVQTTHQEV
LPVYENILSNSNCLILLADNHGQLLKSWGTQRFIDASQTQGFMAGASWSERGAGTNAIGT
ALACEQAVHIEPDEHFLKANRFMTGSASPIFDAERRMIAILDVSSDSFLPPSHTLGMVKM
MSQSVENRLILDQFRDSHFQLTFNTGLNNLDSQWAGLLIFDESGTILCANRRADNLLGVR
LTGVSIEDLFKCPILQLLGETEARPFALHAFGNNRFQCLLKRPRRKPIQLLQPVRPEQPV
APQQTLDLNAIDLGDAKVEKAVRQAQRLLEKDIPLLIHGETGVGKEVFVKALHLASSRAS
QPMIAVNCAAIPAELVESELFGYTKGAFTGAHQKGSIGLIRKADKGTLFLDEIGDMPMAV
QARLLRVLQERCVQPLGSSELYPVDIRLISATNHSLRERVQTGHFRQDLYYRISGLNIEL
PPLRERTDKQALVQRIWERHREPQQQAGFSSEVLDLFEHHPWPGNLRQLNSVIQVALALA
DEQKITFEHLPEDFFLDAQLDEDRDEPVAVLQLKGSFPCAEDLNHLLQAAGGNISQLAKR
LGVSRNTLYKRLREVRQ
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggccaattccagtgcgtcacttgctcacgacatcatcattcaggactcatggacgcgc
tgtcgggacttcggtctcagtcatcagtcgcgcccctcgttcggcgggctgccgggcgcg
caggtttcacaactgctggaacgccataacgctctggtgcagaccacccatcaggaagtg
ctgccggtctatgaaaacatcctcagcaactccaactgtctgatcctgctggccgacaat
cacggccagttgctcaagtcatggggcacccagcgcttcatcgatgcttcgcagacccag
ggtttcatggccggggcaagctggagcgagcgcggcgcggggaccaacgccattggtacg
gcgctggcctgcgaacaggcagtgcatatcgagccggacgagcactttctcaaagccaat
cgctttatgacgggctccgcatcaccgatattcgatgccgagcggcgcatgattgcgata
ctggacgtctccagcgacagcttcctgccgccctctcacacgctgggcatggtgaagatg
atgagccagtcggtggaaaaccggctgattctcgaccagtttcgcgacagccatttccag
ctgaccttcaataccggcctgaacaatctggacagccaatgggcgggcctgctgattttc
gacgaaagcggcacaatcctctgcgccaatcggcgggccgacaacctgctgggcgtgcgg
ctgaccggcgtcagtatcgaggacctgttcaaatgcccgatcctgcaactgctcggcgaa
accgaagcacgccctttcgcgctgcatgcctttggcaataaccgcttccagtgcctgctc
aagcgtccacggcgcaaaccgatccagttattgcagccggtgcggcctgagcaaccggtc
gccccacaacaaaccctcgacctgaacgccattgatctgggcgatgcaaaagtcgaaaaa
gcggttcgccaggctcaacggctgctggaaaaagacatcccgctgctgatccacggcgaa
accggggtcggcaaggaagtgttcgtcaaagccctgcatctggccagctctcgcgccagc
cagcccatgattgccgtcaactgcgcggcgattccggccgaactggtggagtcggaactg
tttggttacaccaaaggggctttcaccggcgcccatcagaaaggcagcatcggtctgatc
cgcaaggccgataaaggcacactgtttctcgacgaaatcggcgacatgccgatggcagtg
caagcgcgtctgttgcgagtgttgcaggaacgatgtgtccagccactgggcagcagcgag
ctgtatccggtagatatccgcctgatctcggccaccaaccacagcctgcgcgaacgggta
caaacagggcatttccgtcaggacctgtattaccggatcagcgggctgaatatcgagttg
ccgccactgcgcgaacgcaccgacaaacaggcactggtgcagcgcatctgggagcggcat
cgcgaacctcagcagcaggcagggttttccagcgaggtgcttgacctgttcgagcatcat
ccgtggccaggcaatcttcgccagctcaatagcgtgattcaggtggccttggcgttggca
gacgagcagaaaatcaccttcgaacatttgccggaagatttctttctggatgcacagctg
gatgaggacagagacgagcctgtggcggtcttgcagctaaaggggagttttccgtgtgcc
gaagacctgaaccacctgttgcaggcagccggaggcaatatttcacagctggccaagcgg
ttgggggttagtcgcaatacgctttacaagcggttgcgggaggttcgtcagtga
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